Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28916 | 5' | -57.7 | NC_006146.1 | + | 160616 | 0.67 | 0.801834 |
Target: 5'- uCGGCCGCCUGGCaugccaGCUCCGcGUa--- -3' miRNA: 3'- cGUUGGUGGACCGc-----CGAGGC-CAcuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 42645 | 0.67 | 0.80095 |
Target: 5'- aGCGGCCGCgUGuacugcuccaacuGCGGCUCgcccgCGGUGGGc -3' miRNA: 3'- -CGUUGGUGgAC-------------CGCCGAG-----GCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 13854 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 142457 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 14703 | 0.95 | 0.017545 |
Target: 5'- uGCAACCACCUGGCGGUcCCGGUGAAUu -3' miRNA: 3'- -CGUUGGUGGACCGCCGaGGCCACUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 123298 | 0.77 | 0.279471 |
Target: 5'- gGCGAUC-CCUGGCGGCcgCCGaGUGGAUc -3' miRNA: 3'- -CGUUGGuGGACCGCCGa-GGC-CACUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 145535 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 28415 | 0.66 | 0.827617 |
Target: 5'- -gAACCAaggaGGCGGCUCCGGg---- -3' miRNA: 3'- cgUUGGUgga-CCGCCGAGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 137559 | 0.67 | 0.819187 |
Target: 5'- gGCGGCCACCcGGCuGCcCCGGa---- -3' miRNA: 3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 120485 | 0.67 | 0.808851 |
Target: 5'- uGCGGCCugccugccgucCCUGGCGGCcgaggacgcgagCCGcGUGGAUg -3' miRNA: 3'- -CGUUGGu----------GGACCGCCGa-----------GGC-CACUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 11133 | 0.67 | 0.801834 |
Target: 5'- uCGGCCuACCUGGgGGCggUGGUGGu- -3' miRNA: 3'- cGUUGG-UGGACCgCCGagGCCACUua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 117575 | 0.67 | 0.792928 |
Target: 5'- cGCGGCCGCCgGGCcuccucgggcucGGaCUCCGGccagGGAg -3' miRNA: 3'- -CGUUGGUGGaCCG------------CC-GAGGCCa---CUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 43048 | 0.67 | 0.78388 |
Target: 5'- gGCGgauacGCCGCCUGGCGGUUgaGGg---- -3' miRNA: 3'- -CGU-----UGGUGGACCGCCGAggCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 121766 | 0.68 | 0.736812 |
Target: 5'- cCGugCGCCUGGUGGCUuuGcaGAAUu -3' miRNA: 3'- cGUugGUGGACCGCCGAggCcaCUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 160064 | 0.68 | 0.717298 |
Target: 5'- -uGGCCugCUGGCuGGCUUCGGa---- -3' miRNA: 3'- cgUUGGugGACCG-CCGAGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 81795 | 0.68 | 0.717298 |
Target: 5'- gGguGCCACCUGG-GGCagugCCGGUa--- -3' miRNA: 3'- -CguUGGUGGACCgCCGa---GGCCAcuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 72364 | 0.69 | 0.706439 |
Target: 5'- -gGACCGgCUGGCGGCgacgaaacccgagUCgGGUGGGg -3' miRNA: 3'- cgUUGGUgGACCGCCG-------------AGgCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 39467 | 0.7 | 0.637085 |
Target: 5'- aUAACUuguGCCgUGGUGGCUCCGGUa--- -3' miRNA: 3'- cGUUGG---UGG-ACCGCCGAGGCCAcuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 123927 | 0.7 | 0.626956 |
Target: 5'- cGCAAUU-CCUGGCGGCggccgggCCGGcGAAa -3' miRNA: 3'- -CGUUGGuGGACCGCCGa------GGCCaCUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 71718 | 0.7 | 0.626956 |
Target: 5'- gGCGgacGCCACCUGGUGGCUCUa------ -3' miRNA: 3'- -CGU---UGGUGGACCGCCGAGGccacuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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