miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 5' -57.7 NC_006146.1 + 43472 0.67 0.79203
Target:  5'- gGCAGCCuCCUcGGCGGCcguugacaccggcUCCGGcGGc- -3'
miRNA:   3'- -CGUUGGuGGA-CCGCCG-------------AGGCCaCUua -5'
28916 5' -57.7 NC_006146.1 + 51923 0.67 0.792928
Target:  5'- -gAGgCACCgacgGGCGGCcCCGGUGc-- -3'
miRNA:   3'- cgUUgGUGGa---CCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 142673 0.67 0.792928
Target:  5'- cGCAGCCACCUGcc--CUCCGGcUGggUc -3'
miRNA:   3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5'
28916 5' -57.7 NC_006146.1 + 117575 0.67 0.792928
Target:  5'- cGCGGCCGCCgGGCcuccucgggcucGGaCUCCGGccagGGAg -3'
miRNA:   3'- -CGUUGGUGGaCCG------------CC-GAGGCCa---CUUa -5'
28916 5' -57.7 NC_006146.1 + 42645 0.67 0.80095
Target:  5'- aGCGGCCGCgUGuacugcuccaacuGCGGCUCgcccgCGGUGGGc -3'
miRNA:   3'- -CGUUGGUGgAC-------------CGCCGAG-----GCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 160616 0.67 0.801834
Target:  5'- uCGGCCGCCUGGCaugccaGCUCCGcGUa--- -3'
miRNA:   3'- cGUUGGUGGACCGc-----CGAGGC-CAcuua -5'
28916 5' -57.7 NC_006146.1 + 68195 0.67 0.801834
Target:  5'- cGCGGgCGCa--GCGGCUCCGG-GAGg -3'
miRNA:   3'- -CGUUgGUGgacCGCCGAGGCCaCUUa -5'
28916 5' -57.7 NC_006146.1 + 11133 0.67 0.801834
Target:  5'- uCGGCCuACCUGGgGGCggUGGUGGu- -3'
miRNA:   3'- cGUUGG-UGGACCgCCGagGCCACUua -5'
28916 5' -57.7 NC_006146.1 + 120485 0.67 0.808851
Target:  5'- uGCGGCCugccugccgucCCUGGCGGCcgaggacgcgagCCGcGUGGAUg -3'
miRNA:   3'- -CGUUGGu----------GGACCGCCGa-----------GGC-CACUUA- -5'
28916 5' -57.7 NC_006146.1 + 142864 0.67 0.819187
Target:  5'- uGCAGCCACCUGcc--CUCCGGcUGggUc -3'
miRNA:   3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5'
28916 5' -57.7 NC_006146.1 + 16932 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 20009 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 29243 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 23087 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 26165 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 140507 0.67 0.819187
Target:  5'- uGC-GCCACCUGGCGGC-CCu------ -3'
miRNA:   3'- -CGuUGGUGGACCGCCGaGGccacuua -5'
28916 5' -57.7 NC_006146.1 + 137681 0.67 0.819187
Target:  5'- gGCGGCCACCcGGCuGCcCCGGa---- -3'
miRNA:   3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 137559 0.67 0.819187
Target:  5'- gGCGGCCACCcGGCuGCcCCGGa---- -3'
miRNA:   3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 13854 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 28415 0.66 0.827617
Target:  5'- -gAACCAaggaGGCGGCUCCGGg---- -3'
miRNA:   3'- cgUUGGUgga-CCGCCGAGGCCacuua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.