miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 5' -57.7 NC_006146.1 + 14703 0.95 0.017545
Target:  5'- uGCAACCACCUGGCGGUcCCGGUGAAUu -3'
miRNA:   3'- -CGUUGGUGGACCGCCGaGGCCACUUA- -5'
28916 5' -57.7 NC_006146.1 + 123298 0.77 0.279471
Target:  5'- gGCGAUC-CCUGGCGGCcgCCGaGUGGAUc -3'
miRNA:   3'- -CGUUGGuGGACCGCCGa-GGC-CACUUA- -5'
28916 5' -57.7 NC_006146.1 + 50835 0.72 0.517312
Target:  5'- aGCGGCU-CCUGGCGGUguccaggCUGGUGGGg -3'
miRNA:   3'- -CGUUGGuGGACCGCCGa------GGCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 10974 0.7 0.616831
Target:  5'- aCAGUCACCUaaagcaGGCGGCgcugCCGGUGAc- -3'
miRNA:   3'- cGUUGGUGGA------CCGCCGa---GGCCACUua -5'
28916 5' -57.7 NC_006146.1 + 123927 0.7 0.626956
Target:  5'- cGCAAUU-CCUGGCGGCggccgggCCGGcGAAa -3'
miRNA:   3'- -CGUUGGuGGACCGCCGa------GGCCaCUUa -5'
28916 5' -57.7 NC_006146.1 + 71718 0.7 0.626956
Target:  5'- gGCGgacGCCACCUGGUGGCUCUa------ -3'
miRNA:   3'- -CGU---UGGUGGACCGCCGAGGccacuua -5'
28916 5' -57.7 NC_006146.1 + 55120 0.7 0.626956
Target:  5'- -uGGCCACCUGcucguacuCGGcCUCCGGUGGGg -3'
miRNA:   3'- cgUUGGUGGACc-------GCC-GAGGCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 39467 0.7 0.637085
Target:  5'- aUAACUuguGCCgUGGUGGCUCCGGUa--- -3'
miRNA:   3'- cGUUGG---UGG-ACCGCCGAGGCCAcuua -5'
28916 5' -57.7 NC_006146.1 + 33351 0.7 0.647211
Target:  5'- gGCAGCCg---GGUGGCcgCCGGUGggUc -3'
miRNA:   3'- -CGUUGGuggaCCGCCGa-GGCCACuuA- -5'
28916 5' -57.7 NC_006146.1 + 72364 0.69 0.706439
Target:  5'- -gGACCGgCUGGCGGCgacgaaacccgagUCgGGUGGGg -3'
miRNA:   3'- cgUUGGUgGACCGCCG-------------AGgCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 127170 0.68 0.717298
Target:  5'- cGCGACCACCUGGC----CCGGgcgGAGg -3'
miRNA:   3'- -CGUUGGUGGACCGccgaGGCCa--CUUa -5'
28916 5' -57.7 NC_006146.1 + 81795 0.68 0.717298
Target:  5'- gGguGCCACCUGG-GGCagugCCGGUa--- -3'
miRNA:   3'- -CguUGGUGGACCgCCGa---GGCCAcuua -5'
28916 5' -57.7 NC_006146.1 + 160064 0.68 0.717298
Target:  5'- -uGGCCugCUGGCuGGCUUCGGa---- -3'
miRNA:   3'- cgUUGGugGACCG-CCGAGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 26476 0.68 0.727095
Target:  5'- --cACCACUUGGCGugUCUGGUGAGa -3'
miRNA:   3'- cguUGGUGGACCGCcgAGGCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 40422 0.68 0.736812
Target:  5'- aGUAGCCACCcggGGCGGCagCGGc---- -3'
miRNA:   3'- -CGUUGGUGGa--CCGCCGagGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 70702 0.68 0.736812
Target:  5'- -gGGCCGCCUGGUGuCUCUGGcGAu- -3'
miRNA:   3'- cgUUGGUGGACCGCcGAGGCCaCUua -5'
28916 5' -57.7 NC_006146.1 + 121766 0.68 0.736812
Target:  5'- cCGugCGCCUGGUGGCUuuGcaGAAUu -3'
miRNA:   3'- cGUugGUGGACCGCCGAggCcaCUUA- -5'
28916 5' -57.7 NC_006146.1 + 43048 0.67 0.78388
Target:  5'- gGCGgauacGCCGCCUGGCGGUUgaGGg---- -3'
miRNA:   3'- -CGU-----UGGUGGACCGCCGAggCCacuua -5'
28916 5' -57.7 NC_006146.1 + 101950 0.67 0.78388
Target:  5'- uGCccuGCCcCCUGGCuaggGGCUCCGGg---- -3'
miRNA:   3'- -CGu--UGGuGGACCG----CCGAGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 14782 0.67 0.78388
Target:  5'- gGC-ACCugUUGGCGGCUgaGGgGAAg -3'
miRNA:   3'- -CGuUGGugGACCGCCGAggCCaCUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.