miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 5' -57.7 NC_006146.1 + 5611 0.66 0.859526
Target:  5'- gGCcGCCACCUGGCa-CUCCuGuGUGAc- -3'
miRNA:   3'- -CGuUGGUGGACCGccGAGG-C-CACUua -5'
28916 5' -57.7 NC_006146.1 + 10974 0.7 0.616831
Target:  5'- aCAGUCACCUaaagcaGGCGGCgcugCCGGUGAc- -3'
miRNA:   3'- cGUUGGUGGA------CCGCCGa---GGCCACUua -5'
28916 5' -57.7 NC_006146.1 + 11133 0.67 0.801834
Target:  5'- uCGGCCuACCUGGgGGCggUGGUGGu- -3'
miRNA:   3'- cGUUGG-UGGACCgCCGagGCCACUua -5'
28916 5' -57.7 NC_006146.1 + 13854 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 14703 0.95 0.017545
Target:  5'- uGCAACCACCUGGCGGUcCCGGUGAAUu -3'
miRNA:   3'- -CGUUGGUGGACCGCCGaGGCCACUUA- -5'
28916 5' -57.7 NC_006146.1 + 14782 0.67 0.78388
Target:  5'- gGC-ACCugUUGGCGGCUgaGGgGAAg -3'
miRNA:   3'- -CGuUGGugGACCGCCGAggCCaCUUa -5'
28916 5' -57.7 NC_006146.1 + 16932 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 20009 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 23087 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 26165 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 26476 0.68 0.727095
Target:  5'- --cACCACUUGGCGugUCUGGUGAGa -3'
miRNA:   3'- cguUGGUGGACCGCcgAGGCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 28415 0.66 0.827617
Target:  5'- -gAACCAaggaGGCGGCUCCGGg---- -3'
miRNA:   3'- cgUUGGUgga-CCGCCGAGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 29243 0.67 0.819187
Target:  5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3'
miRNA:   3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 33351 0.7 0.647211
Target:  5'- gGCAGCCg---GGUGGCcgCCGGUGggUc -3'
miRNA:   3'- -CGUUGGuggaCCGCCGa-GGCCACuuA- -5'
28916 5' -57.7 NC_006146.1 + 39467 0.7 0.637085
Target:  5'- aUAACUuguGCCgUGGUGGCUCCGGUa--- -3'
miRNA:   3'- cGUUGG---UGG-ACCGCCGAGGCCAcuua -5'
28916 5' -57.7 NC_006146.1 + 40422 0.68 0.736812
Target:  5'- aGUAGCCACCcggGGCGGCagCGGc---- -3'
miRNA:   3'- -CGUUGGUGGa--CCGCCGagGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 42645 0.67 0.80095
Target:  5'- aGCGGCCGCgUGuacugcuccaacuGCGGCUCgcccgCGGUGGGc -3'
miRNA:   3'- -CGUUGGUGgAC-------------CGCCGAG-----GCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 43048 0.67 0.78388
Target:  5'- gGCGgauacGCCGCCUGGCGGUUgaGGg---- -3'
miRNA:   3'- -CGU-----UGGUGGACCGCCGAggCCacuua -5'
28916 5' -57.7 NC_006146.1 + 43472 0.67 0.79203
Target:  5'- gGCAGCCuCCUcGGCGGCcguugacaccggcUCCGGcGGc- -3'
miRNA:   3'- -CGUUGGuGGA-CCGCCG-------------AGGCCaCUua -5'
28916 5' -57.7 NC_006146.1 + 50835 0.72 0.517312
Target:  5'- aGCGGCU-CCUGGCGGUguccaggCUGGUGGGg -3'
miRNA:   3'- -CGUUGGuGGACCGCCGa------GGCCACUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.