Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28916 | 5' | -57.7 | NC_006146.1 | + | 160616 | 0.67 | 0.801834 |
Target: 5'- uCGGCCGCCUGGCaugccaGCUCCGcGUa--- -3' miRNA: 3'- cGUUGGUGGACCGc-----CGAGGC-CAcuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 160064 | 0.68 | 0.717298 |
Target: 5'- -uGGCCugCUGGCuGGCUUCGGa---- -3' miRNA: 3'- cgUUGGugGACCG-CCGAGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 157846 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 154768 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 148613 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 145535 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 142864 | 0.67 | 0.819187 |
Target: 5'- uGCAGCCACCUGcc--CUCCGGcUGggUc -3' miRNA: 3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 142673 | 0.67 | 0.792928 |
Target: 5'- cGCAGCCACCUGcc--CUCCGGcUGggUc -3' miRNA: 3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 142457 | 0.66 | 0.851835 |
Target: 5'- gGCGGCCGCCuUGG-GGC-CCGGa---- -3' miRNA: 3'- -CGUUGGUGG-ACCgCCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 140507 | 0.67 | 0.819187 |
Target: 5'- uGC-GCCACCUGGCGGC-CCu------ -3' miRNA: 3'- -CGuUGGUGGACCGCCGaGGccacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 137681 | 0.67 | 0.819187 |
Target: 5'- gGCGGCCACCcGGCuGCcCCGGa---- -3' miRNA: 3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 137559 | 0.67 | 0.819187 |
Target: 5'- gGCGGCCACCcGGCuGCcCCGGa---- -3' miRNA: 3'- -CGUUGGUGGaCCGcCGaGGCCacuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 127170 | 0.68 | 0.717298 |
Target: 5'- cGCGACCACCUGGC----CCGGgcgGAGg -3' miRNA: 3'- -CGUUGGUGGACCGccgaGGCCa--CUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 123927 | 0.7 | 0.626956 |
Target: 5'- cGCAAUU-CCUGGCGGCggccgggCCGGcGAAa -3' miRNA: 3'- -CGUUGGuGGACCGCCGa------GGCCaCUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 123298 | 0.77 | 0.279471 |
Target: 5'- gGCGAUC-CCUGGCGGCcgCCGaGUGGAUc -3' miRNA: 3'- -CGUUGGuGGACCGCCGa-GGC-CACUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 121766 | 0.68 | 0.736812 |
Target: 5'- cCGugCGCCUGGUGGCUuuGcaGAAUu -3' miRNA: 3'- cGUugGUGGACCGCCGAggCcaCUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 120485 | 0.67 | 0.808851 |
Target: 5'- uGCGGCCugccugccgucCCUGGCGGCcgaggacgcgagCCGcGUGGAUg -3' miRNA: 3'- -CGUUGGu----------GGACCGCCGa-----------GGC-CACUUA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 117575 | 0.67 | 0.792928 |
Target: 5'- cGCGGCCGCCgGGCcuccucgggcucGGaCUCCGGccagGGAg -3' miRNA: 3'- -CGUUGGUGGaCCG------------CC-GAGGCCa---CUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 115650 | 0.66 | 0.867016 |
Target: 5'- gGCcGCCACCcgGGCGGgggUCaUGGUGGAg -3' miRNA: 3'- -CGuUGGUGGa-CCGCCg--AG-GCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 112968 | 0.66 | 0.867016 |
Target: 5'- uGCAG-CACCaUGGCGGCgCCGGc---- -3' miRNA: 3'- -CGUUgGUGG-ACCGCCGaGGCCacuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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