Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28916 | 5' | -57.7 | NC_006146.1 | + | 50835 | 0.72 | 0.517312 |
Target: 5'- aGCGGCU-CCUGGCGGUguccaggCUGGUGGGg -3' miRNA: 3'- -CGUUGGuGGACCGCCGa------GGCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 23087 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 29243 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 115650 | 0.66 | 0.867016 |
Target: 5'- gGCcGCCACCcgGGCGGgggUCaUGGUGGAg -3' miRNA: 3'- -CGuUGGUGGa-CCGCCg--AG-GCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 127170 | 0.68 | 0.717298 |
Target: 5'- cGCGACCACCUGGC----CCGGgcgGAGg -3' miRNA: 3'- -CGUUGGUGGACCGccgaGGCCa--CUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 70702 | 0.68 | 0.736812 |
Target: 5'- -gGGCCGCCUGGUGuCUCUGGcGAu- -3' miRNA: 3'- cgUUGGUGGACCGCcGAGGCCaCUua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 43472 | 0.67 | 0.79203 |
Target: 5'- gGCAGCCuCCUcGGCGGCcguugacaccggcUCCGGcGGc- -3' miRNA: 3'- -CGUUGGuGGA-CCGCCG-------------AGGCCaCUua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 51923 | 0.67 | 0.792928 |
Target: 5'- -gAGgCACCgacgGGCGGCcCCGGUGc-- -3' miRNA: 3'- cgUUgGUGGa---CCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 160616 | 0.67 | 0.801834 |
Target: 5'- uCGGCCGCCUGGCaugccaGCUCCGcGUa--- -3' miRNA: 3'- cGUUGGUGGACCGc-----CGAGGC-CAcuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 20009 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 142864 | 0.67 | 0.819187 |
Target: 5'- uGCAGCCACCUGcc--CUCCGGcUGggUc -3' miRNA: 3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 42645 | 0.67 | 0.80095 |
Target: 5'- aGCGGCCGCgUGuacugcuccaacuGCGGCUCgcccgCGGUGGGc -3' miRNA: 3'- -CGUUGGUGgAC-------------CGCCGAG-----GCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 10974 | 0.7 | 0.616831 |
Target: 5'- aCAGUCACCUaaagcaGGCGGCgcugCCGGUGAc- -3' miRNA: 3'- cGUUGGUGGA------CCGCCGa---GGCCACUua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 13854 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 55120 | 0.7 | 0.626956 |
Target: 5'- -uGGCCACCUGcucguacuCGGcCUCCGGUGGGg -3' miRNA: 3'- cgUUGGUGGACc-------GCC-GAGGCCACUUa -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 142673 | 0.67 | 0.792928 |
Target: 5'- cGCAGCCACCUGcc--CUCCGGcUGggUc -3' miRNA: 3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 16932 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 26165 | 0.67 | 0.819187 |
Target: 5'- aGgGACC-CC-GGCGGC-CCGGUGu-- -3' miRNA: 3'- -CgUUGGuGGaCCGCCGaGGCCACuua -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 33351 | 0.7 | 0.647211 |
Target: 5'- gGCAGCCg---GGUGGCcgCCGGUGggUc -3' miRNA: 3'- -CGUUGGuggaCCGCCGa-GGCCACuuA- -5' |
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28916 | 5' | -57.7 | NC_006146.1 | + | 101950 | 0.67 | 0.78388 |
Target: 5'- uGCccuGCCcCCUGGCuaggGGCUCCGGg---- -3' miRNA: 3'- -CGu--UGGuGGACCG----CCGAGGCCacuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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