miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28916 5' -57.7 NC_006146.1 + 120485 0.67 0.808851
Target:  5'- uGCGGCCugccugccgucCCUGGCGGCcgaggacgcgagCCGcGUGGAUg -3'
miRNA:   3'- -CGUUGGu----------GGACCGCCGa-----------GGC-CACUUA- -5'
28916 5' -57.7 NC_006146.1 + 160616 0.67 0.801834
Target:  5'- uCGGCCGCCUGGCaugccaGCUCCGcGUa--- -3'
miRNA:   3'- cGUUGGUGGACCGc-----CGAGGC-CAcuua -5'
28916 5' -57.7 NC_006146.1 + 11133 0.67 0.801834
Target:  5'- uCGGCCuACCUGGgGGCggUGGUGGu- -3'
miRNA:   3'- cGUUGG-UGGACCgCCGagGCCACUua -5'
28916 5' -57.7 NC_006146.1 + 68195 0.67 0.801834
Target:  5'- cGCGGgCGCa--GCGGCUCCGG-GAGg -3'
miRNA:   3'- -CGUUgGUGgacCGCCGAGGCCaCUUa -5'
28916 5' -57.7 NC_006146.1 + 42645 0.67 0.80095
Target:  5'- aGCGGCCGCgUGuacugcuccaacuGCGGCUCgcccgCGGUGGGc -3'
miRNA:   3'- -CGUUGGUGgAC-------------CGCCGAG-----GCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 51923 0.67 0.792928
Target:  5'- -gAGgCACCgacgGGCGGCcCCGGUGc-- -3'
miRNA:   3'- cgUUgGUGGa---CCGCCGaGGCCACuua -5'
28916 5' -57.7 NC_006146.1 + 142673 0.67 0.792928
Target:  5'- cGCAGCCACCUGcc--CUCCGGcUGggUc -3'
miRNA:   3'- -CGUUGGUGGACcgccGAGGCC-ACuuA- -5'
28916 5' -57.7 NC_006146.1 + 117575 0.67 0.792928
Target:  5'- cGCGGCCGCCgGGCcuccucgggcucGGaCUCCGGccagGGAg -3'
miRNA:   3'- -CGUUGGUGGaCCG------------CC-GAGGCCa---CUUa -5'
28916 5' -57.7 NC_006146.1 + 43472 0.67 0.79203
Target:  5'- gGCAGCCuCCUcGGCGGCcguugacaccggcUCCGGcGGc- -3'
miRNA:   3'- -CGUUGGuGGA-CCGCCG-------------AGGCCaCUua -5'
28916 5' -57.7 NC_006146.1 + 101950 0.67 0.78388
Target:  5'- uGCccuGCCcCCUGGCuaggGGCUCCGGg---- -3'
miRNA:   3'- -CGu--UGGuGGACCG----CCGAGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 14782 0.67 0.78388
Target:  5'- gGC-ACCugUUGGCGGCUgaGGgGAAg -3'
miRNA:   3'- -CGuUGGugGACCGCCGAggCCaCUUa -5'
28916 5' -57.7 NC_006146.1 + 43048 0.67 0.78388
Target:  5'- gGCGgauacGCCGCCUGGCGGUUgaGGg---- -3'
miRNA:   3'- -CGU-----UGGUGGACCGCCGAggCCacuua -5'
28916 5' -57.7 NC_006146.1 + 121766 0.68 0.736812
Target:  5'- cCGugCGCCUGGUGGCUuuGcaGAAUu -3'
miRNA:   3'- cGUugGUGGACCGCCGAggCcaCUUA- -5'
28916 5' -57.7 NC_006146.1 + 40422 0.68 0.736812
Target:  5'- aGUAGCCACCcggGGCGGCagCGGc---- -3'
miRNA:   3'- -CGUUGGUGGa--CCGCCGagGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 70702 0.68 0.736812
Target:  5'- -gGGCCGCCUGGUGuCUCUGGcGAu- -3'
miRNA:   3'- cgUUGGUGGACCGCcGAGGCCaCUua -5'
28916 5' -57.7 NC_006146.1 + 26476 0.68 0.727095
Target:  5'- --cACCACUUGGCGugUCUGGUGAGa -3'
miRNA:   3'- cguUGGUGGACCGCcgAGGCCACUUa -5'
28916 5' -57.7 NC_006146.1 + 127170 0.68 0.717298
Target:  5'- cGCGACCACCUGGC----CCGGgcgGAGg -3'
miRNA:   3'- -CGUUGGUGGACCGccgaGGCCa--CUUa -5'
28916 5' -57.7 NC_006146.1 + 160064 0.68 0.717298
Target:  5'- -uGGCCugCUGGCuGGCUUCGGa---- -3'
miRNA:   3'- cgUUGGugGACCG-CCGAGGCCacuua -5'
28916 5' -57.7 NC_006146.1 + 81795 0.68 0.717298
Target:  5'- gGguGCCACCUGG-GGCagugCCGGUa--- -3'
miRNA:   3'- -CguUGGUGGACCgCCGa---GGCCAcuua -5'
28916 5' -57.7 NC_006146.1 + 72364 0.69 0.706439
Target:  5'- -gGACCGgCUGGCGGCgacgaaacccgagUCgGGUGGGg -3'
miRNA:   3'- cgUUGGUgGACCGCCG-------------AGgCCACUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.