Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28916 | 5' | -57.7 | NC_006146.1 | + | 33351 | 0.7 | 0.647211 |
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Target: 5'- gGCAGCCg---GGUGGCcgCCGGUGggUc -3' miRNA: 3'- -CGUUGGuggaCCGCCGa-GGCCACuuA- -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 39467 | 0.7 | 0.637085 |
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Target: 5'- aUAACUuguGCCgUGGUGGCUCCGGUa--- -3' miRNA: 3'- cGUUGG---UGG-ACCGCCGAGGCCAcuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 71718 | 0.7 | 0.626956 |
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Target: 5'- gGCGgacGCCACCUGGUGGCUCUa------ -3' miRNA: 3'- -CGU---UGGUGGACCGCCGAGGccacuua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 123927 | 0.7 | 0.626956 |
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Target: 5'- cGCAAUU-CCUGGCGGCggccgggCCGGcGAAa -3' miRNA: 3'- -CGUUGGuGGACCGCCGa------GGCCaCUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 55120 | 0.7 | 0.626956 |
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Target: 5'- -uGGCCACCUGcucguacuCGGcCUCCGGUGGGg -3' miRNA: 3'- cgUUGGUGGACc-------GCC-GAGGCCACUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 10974 | 0.7 | 0.616831 |
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Target: 5'- aCAGUCACCUaaagcaGGCGGCgcugCCGGUGAc- -3' miRNA: 3'- cGUUGGUGGA------CCGCCGa---GGCCACUua -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 50835 | 0.72 | 0.517312 |
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Target: 5'- aGCGGCU-CCUGGCGGUguccaggCUGGUGGGg -3' miRNA: 3'- -CGUUGGuGGACCGCCGa------GGCCACUUa -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 123298 | 0.77 | 0.279471 |
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Target: 5'- gGCGAUC-CCUGGCGGCcgCCGaGUGGAUc -3' miRNA: 3'- -CGUUGGuGGACCGCCGa-GGC-CACUUA- -5' |
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| 28916 | 5' | -57.7 | NC_006146.1 | + | 14703 | 0.95 | 0.017545 |
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Target: 5'- uGCAACCACCUGGCGGUcCCGGUGAAUu -3' miRNA: 3'- -CGUUGGUGGACCGCCGaGGCCACUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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