miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 168185 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 52326 0.67 0.781921
Target:  5'- cCCUGACgugGGCCGGGGuGcCCGGGGc- -3'
miRNA:   3'- aGGACUG---CCGGUUCCuCcGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 103719 0.67 0.781921
Target:  5'- cUCCgGACuGCgGAGGAagcgGGCgAAGGUGu -3'
miRNA:   3'- -AGGaCUGcCGgUUCCU----CCGgUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 169117 0.67 0.781921
Target:  5'- cCCUGGauGUCGGGGAGGgCCcGGGg- -3'
miRNA:   3'- aGGACUgcCGGUUCCUCC-GGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 170668 0.67 0.781921
Target:  5'- ---cGGC-GCgGGGGAGGCCAGGGg- -3'
miRNA:   3'- aggaCUGcCGgUUCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 75244 0.67 0.779191
Target:  5'- gCCUGACcgaGGCgggcguggggugcaCGGGGAuGGCCGAGGa- -3'
miRNA:   3'- aGGACUG---CCG--------------GUUCCU-CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 168428 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 120211 0.67 0.772777
Target:  5'- gCCUGcCGGUCGGugccuGuGGGGCCGGGGUu -3'
miRNA:   3'- aGGACuGCCGGUU-----C-CUCCGGUUCCAc -5'
28917 5' -58.4 NC_006146.1 + 167496 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 52995 0.67 0.772777
Target:  5'- aCCUGcCGGCCGuggccgcGGGGGUCGaugaccagccucGGGUGc -3'
miRNA:   3'- aGGACuGCCGGUu------CCUCCGGU------------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 10662 0.67 0.772777
Target:  5'- --aUGugGGaCGGGGAGGCCcGGGg- -3'
miRNA:   3'- aggACugCCgGUUCCUCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 170291 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 169360 0.67 0.772777
Target:  5'- gCCUGGCGGgggaGAGGGGG-CAGGGcUGg -3'
miRNA:   3'- aGGACUGCCgg--UUCCUCCgGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 52481 0.67 0.772777
Target:  5'- aCCU--CGGCCAGGGAcuggacgacGGCCGAGuUGg -3'
miRNA:   3'- aGGAcuGCCGGUUCCU---------CCGGUUCcAC- -5'
28917 5' -58.4 NC_006146.1 + 20690 0.67 0.772777
Target:  5'- cUCCUGGCuGGCCAAGcGcaAGGCCAu---- -3'
miRNA:   3'- -AGGACUG-CCGGUUC-C--UCCGGUuccac -5'
28917 5' -58.4 NC_006146.1 + 43277 0.67 0.754134
Target:  5'- ---gGGCGGCCu-GGAGGuCCGgcAGGUGc -3'
miRNA:   3'- aggaCUGCCGGuuCCUCC-GGU--UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 12834 0.67 0.754134
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccuggggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG--------GUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 114723 0.67 0.75319
Target:  5'- cCCUGGCGGCCGAGuaucGGCgcauccuCAAGGa- -3'
miRNA:   3'- aGGACUGCCGGUUCcu--CCG-------GUUCCac -5'
28917 5' -58.4 NC_006146.1 + 34051 0.67 0.75319
Target:  5'- gCCuaUGcCGGCCGGGGgucccguggcacgGGGCCGGGGg- -3'
miRNA:   3'- aGG--ACuGCCGGUUCC-------------UCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 137003 0.67 0.750353
Target:  5'- cUCCagGACggggguaGGCCGggcacaccccggggAGGAGGCC-GGGUGg -3'
miRNA:   3'- -AGGa-CUG-------CCGGU--------------UCCUCCGGuUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.