miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 33028 0.69 0.676104
Target:  5'- cCCUGcCGGCCcGGGgcgGGGCCcGGGa- -3'
miRNA:   3'- aGGACuGCCGGuUCC---UCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 34051 0.67 0.75319
Target:  5'- gCCuaUGcCGGCCGGGGgucccguggcacgGGGCCGGGGg- -3'
miRNA:   3'- aGG--ACuGCCGGUUCC-------------UCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 38938 0.69 0.646034
Target:  5'- cUCUUGaaGCGGUCGAGGGuGGCCuuggcauccGGGUGg -3'
miRNA:   3'- -AGGAC--UGCCGGUUCCU-CCGGu--------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 39949 0.66 0.841837
Target:  5'- cUCCUGAcccugaugacaCGGCUggGGAaggagaGGCUGAGGcUGc -3'
miRNA:   3'- -AGGACU-----------GCCGGuuCCU------CCGGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 41060 0.8 0.177927
Target:  5'- cCCUGGgGGCCucgggguggAGGGAGGCCAGGGa- -3'
miRNA:   3'- aGGACUgCCGG---------UUCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 41585 0.7 0.625921
Target:  5'- -aCUGGCuGGCCGAGGcggagAGGCCcGGGg- -3'
miRNA:   3'- agGACUG-CCGGUUCC-----UCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 42332 0.67 0.790935
Target:  5'- -gCUGACuGGCCcGGGAGGUCA--GUGu -3'
miRNA:   3'- agGACUG-CCGGuUCCUCCGGUucCAC- -5'
28917 5' -58.4 NC_006146.1 + 43060 0.7 0.615867
Target:  5'- gCCUGGCGGUUGAGGGGuGCCAGc--- -3'
miRNA:   3'- aGGACUGCCGGUUCCUC-CGGUUccac -5'
28917 5' -58.4 NC_006146.1 + 43277 0.67 0.754134
Target:  5'- ---gGGCGGCCu-GGAGGuCCGgcAGGUGc -3'
miRNA:   3'- aggaCUGCCGGuuCCUCC-GGU--UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 43977 0.72 0.507496
Target:  5'- aUCCUGccaGCGGgaGAGGAGGCUgaguaggccgGAGGUGg -3'
miRNA:   3'- -AGGAC---UGCCggUUCCUCCGG----------UUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 44529 0.69 0.656079
Target:  5'- -gCUGACGGgCGgaggacgguGGGGGGCUgcGGUGg -3'
miRNA:   3'- agGACUGCCgGU---------UCCUCCGGuuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 44771 0.69 0.68607
Target:  5'- gCCcGGCGGgCGGGGAacccaGGCCGGGGa- -3'
miRNA:   3'- aGGaCUGCCgGUUCCU-----CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 44941 0.66 0.817116
Target:  5'- cUCgUGGCcaggGGCgCGGGGAGGCCccGGGGg- -3'
miRNA:   3'- -AGgACUG----CCG-GUUCCUCCGG--UUCCac -5'
28917 5' -58.4 NC_006146.1 + 45504 0.7 0.605826
Target:  5'- uUUCUGuuGGCCAAGacGGCCAcGGUGg -3'
miRNA:   3'- -AGGACugCCGGUUCcuCCGGUuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 45792 0.68 0.705861
Target:  5'- gUCagggGACGGCCGAGGAaGGCCGc---- -3'
miRNA:   3'- -AGga--CUGCCGGUUCCU-CCGGUuccac -5'
28917 5' -58.4 NC_006146.1 + 46728 0.66 0.808541
Target:  5'- cUCCgaGGCgGGCgGAGGccacgcuGGCCAGGGUc -3'
miRNA:   3'- -AGGa-CUG-CCGgUUCCu------CCGGUUCCAc -5'
28917 5' -58.4 NC_006146.1 + 48585 0.79 0.186931
Target:  5'- gCCUcGGgGGUCAGGGAGGCCAgaaGGGUGu -3'
miRNA:   3'- aGGA-CUgCCGGUUCCUCCGGU---UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 49568 0.72 0.488579
Target:  5'- -aCUGA-GGCCcAGcgcuGAGGCCAGGGUGg -3'
miRNA:   3'- agGACUgCCGGuUC----CUCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 51175 0.72 0.507496
Target:  5'- -gCUGugGaGCCGGGGAGGCUgcucGAGGa- -3'
miRNA:   3'- agGACugC-CGGUUCCUCCGG----UUCCac -5'
28917 5' -58.4 NC_006146.1 + 51199 0.66 0.825528
Target:  5'- -gCUGGCguGGUaCAGGGcauccacgAGGCCGGGGUGg -3'
miRNA:   3'- agGACUG--CCG-GUUCC--------UCCGGUUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.