miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 4415 0.66 0.825529
Target:  5'- uUCCgGACGGUCcAGG-GGCU--GGUGa -3'
miRNA:   3'- -AGGaCUGCCGGuUCCuCCGGuuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 4590 0.71 0.53643
Target:  5'- gCCUGGuuuuugaGGUCGAGGAGGgaaacaugaCCGAGGUGa -3'
miRNA:   3'- aGGACUg------CCGGUUCCUCC---------GGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 4979 0.66 0.825529
Target:  5'- cUCCUGGCGGCCucacuaacgcGGGGuGCCugugucagcGGGUa -3'
miRNA:   3'- -AGGACUGCCGGuu--------CCUC-CGGu--------UCCAc -5'
28917 5' -58.4 NC_006146.1 + 7896 0.71 0.517071
Target:  5'- gUCCaaaaGGCCcaaaGAGGAGGCCGAGGa- -3'
miRNA:   3'- -AGGacugCCGG----UUCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 9904 0.69 0.676104
Target:  5'- --gUGACGGCCAggcAGGAGGCgAcGGa- -3'
miRNA:   3'- aggACUGCCGGU---UCCUCCGgUuCCac -5'
28917 5' -58.4 NC_006146.1 + 10662 0.67 0.772777
Target:  5'- --aUGugGGaCGGGGAGGCCcGGGg- -3'
miRNA:   3'- aggACugCCgGUUCCUCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 11422 0.83 0.110007
Target:  5'- gCCUGcaggaccaGGCCAAGGuGGCCAAGGUGg -3'
miRNA:   3'- aGGACug------CCGGUUCCuCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 12725 1.09 0.001775
Target:  5'- gUCCUGACGGCCAAGGAGGCCAAGGUGg -3'
miRNA:   3'- -AGGACUGCCGGUUCCUCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 12834 0.67 0.754134
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccuggggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG--------GUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 14675 0.68 0.695991
Target:  5'- gUCC--ACGGCCGAGGGGGCCc----- -3'
miRNA:   3'- -AGGacUGCCGGUUCCUCCGGuuccac -5'
28917 5' -58.4 NC_006146.1 + 14845 0.71 0.517071
Target:  5'- gCCcGG-GGCCGcGGGAGGCCGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGU-UCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 15018 0.66 0.808541
Target:  5'- cCCUGuuuGCCAGGGAggggcgccuGGCCAGGGc- -3'
miRNA:   3'- aGGACugcCGGUUCCU---------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 15913 0.67 0.743699
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccugggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG-------GUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 18918 0.69 0.656079
Target:  5'- cCCUGACGGUgguGGGGGGUaaCGAGGa- -3'
miRNA:   3'- aGGACUGCCGgu-UCCUCCG--GUUCCac -5'
28917 5' -58.4 NC_006146.1 + 18990 0.67 0.743699
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccugggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG-------GUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 20417 0.7 0.595803
Target:  5'- cUCCgacaggGACGGCUAccAGGGGGCCAcuGUc -3'
miRNA:   3'- -AGGa-----CUGCCGGU--UCCUCCGGUucCAc -5'
28917 5' -58.4 NC_006146.1 + 20690 0.67 0.772777
Target:  5'- cUCCUGGCuGGCCAAGcGcaAGGCCAu---- -3'
miRNA:   3'- -AGGACUG-CCGGUUC-C--UCCGGUuccac -5'
28917 5' -58.4 NC_006146.1 + 22068 0.67 0.743699
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccugggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG-------GUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 25146 0.67 0.743699
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccugggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG-------GUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 28224 0.67 0.743699
Target:  5'- cUCC-GGCGGCCGgacccgAGGAGGCgccugggCGAGGcUGg -3'
miRNA:   3'- -AGGaCUGCCGGU------UCCUCCG-------GUUCC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.