Results 1 - 20 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28917 | 5' | -58.4 | NC_006146.1 | + | 51569 | 0.66 | 0.841837 |
Target: 5'- cCCUgGGCGccGCCGGGaGGGGCCcGGGg- -3' miRNA: 3'- aGGA-CUGC--CGGUUC-CUCCGGuUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 15018 | 0.66 | 0.808541 |
Target: 5'- cCCUGuuuGCCAGGGAggggcgccuGGCCAGGGc- -3' miRNA: 3'- aGGACugcCGGUUCCU---------CCGGUUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 115778 | 0.66 | 0.799811 |
Target: 5'- aCCgGA-GGCCGaguacgagcAGGuGGCCAGGGUu -3' miRNA: 3'- aGGaCUgCCGGU---------UCCuCCGGUUCCAc -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 113712 | 0.66 | 0.799811 |
Target: 5'- cUCUUGAUGuucuCCAccAGGGGGCCcacuGGGGUGa -3' miRNA: 3'- -AGGACUGCc---GGU--UCCUCCGG----UUCCAC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 115417 | 0.66 | 0.797163 |
Target: 5'- -gCUGGCGGCCGGGccucguucucgcccGcGGCCAucgagcGGGUGg -3' miRNA: 3'- agGACUGCCGGUUC--------------CuCCGGU------UCCAC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 61817 | 0.66 | 0.799811 |
Target: 5'- gCCgGcACGGCaCGGGcGGGGUgAAGGUGa -3' miRNA: 3'- aGGaC-UGCCG-GUUC-CUCCGgUUCCAC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 99021 | 0.66 | 0.807675 |
Target: 5'- gUCCgcgUGACGGCCGuguagAGGccccccaGGGCCcggcGGGUGu -3' miRNA: 3'- -AGG---ACUGCCGGU-----UCC-------UCCGGu---UCCAC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 139135 | 0.66 | 0.808541 |
Target: 5'- -gCUGugGGCCGAacGGGGGCUcccgucccccGGGGg- -3' miRNA: 3'- agGACugCCGGUU--CCUCCGG----------UUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 46728 | 0.66 | 0.808541 |
Target: 5'- cUCCgaGGCgGGCgGAGGccacgcuGGCCAGGGUc -3' miRNA: 3'- -AGGa-CUG-CCGgUUCCu------CCGGUUCCAc -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 62836 | 0.66 | 0.817116 |
Target: 5'- cCCUGGCcGCCGuGGccAGGCCgGAGGUu -3' miRNA: 3'- aGGACUGcCGGUuCC--UCCGG-UUCCAc -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 51199 | 0.66 | 0.825528 |
Target: 5'- -gCUGGCguGGUaCAGGGcauccacgAGGCCGGGGUGg -3' miRNA: 3'- agGACUG--CCG-GUUCC--------UCCGGUUCCAC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 143171 | 0.66 | 0.825528 |
Target: 5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3' miRNA: 3'- aGGACUgCCGGuUCCuCCGgUUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 39949 | 0.66 | 0.841837 |
Target: 5'- cUCCUGAcccugaugacaCGGCUggGGAaggagaGGCUGAGGcUGc -3' miRNA: 3'- -AGGACU-----------GCCGGuuCCU------CCGGUUCC-AC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 72143 | 0.66 | 0.834586 |
Target: 5'- uUCCUGAaaggcgugcaagauGCgGAGGAGGCCGAGa-- -3' miRNA: 3'- -AGGACUgc------------CGgUUCCUCCGGUUCcac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 72268 | 0.66 | 0.833771 |
Target: 5'- -gCUGAUGGCCAucuuucAGGGGGaUCucuacguGGGUGg -3' miRNA: 3'- agGACUGCCGGU------UCCUCC-GGu------UCCAC- -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 155483 | 0.66 | 0.825528 |
Target: 5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3' miRNA: 3'- aGGACUgCCGGuUCCuCCGgUUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 158562 | 0.66 | 0.825528 |
Target: 5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3' miRNA: 3'- aGGACUgCCGGuUCCuCCGgUUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 152405 | 0.66 | 0.825528 |
Target: 5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3' miRNA: 3'- aGGACUgCCGGuUCCuCCGgUUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 149327 | 0.66 | 0.825528 |
Target: 5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3' miRNA: 3'- aGGACUgCCGGuUCCuCCGgUUCCac -5' |
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28917 | 5' | -58.4 | NC_006146.1 | + | 146249 | 0.66 | 0.825528 |
Target: 5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3' miRNA: 3'- aGGACUgCCGGuUCCuCCGgUUCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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