miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 48585 0.79 0.186931
Target:  5'- gCCUcGGgGGUCAGGGAGGCCAgaaGGGUGu -3'
miRNA:   3'- aGGA-CUgCCGGUUCCUCCGGU---UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 45504 0.7 0.605826
Target:  5'- uUUCUGuuGGCCAAGacGGCCAcGGUGg -3'
miRNA:   3'- -AGGACugCCGGUUCcuCCGGUuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 57291 0.69 0.635979
Target:  5'- -gCUGACGGUCccccAGGAGGCCuuuGUGg -3'
miRNA:   3'- agGACUGCCGGu---UCCUCCGGuucCAC- -5'
28917 5' -58.4 NC_006146.1 + 170171 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 170402 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 149405 0.74 0.38307
Target:  5'- uUCUgguaGACGGCCAGGuGAGGCaucuGGGUGc -3'
miRNA:   3'- -AGGa---CUGCCGGUUC-CUCCGgu--UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 137834 0.73 0.416565
Target:  5'- aCCUGGaaGgCAGGGGGGCuCGGGGUGg -3'
miRNA:   3'- aGGACUgcCgGUUCCUCCG-GUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 77242 0.73 0.433969
Target:  5'- aUCUGACGGCCAcuuuAGGGuGUgAAGGUGg -3'
miRNA:   3'- aGGACUGCCGGU----UCCUcCGgUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 56266 0.72 0.507496
Target:  5'- gUCCUcGGCGGggagCGAGGAGGCCAGGa-- -3'
miRNA:   3'- -AGGA-CUGCCg---GUUCCUCCGGUUCcac -5'
28917 5' -58.4 NC_006146.1 + 117491 0.7 0.595803
Target:  5'- uUCauaUGAuuUGGCCuccuGGAGGCCAGGGa- -3'
miRNA:   3'- -AGg--ACU--GCCGGuu--CCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 4590 0.71 0.53643
Target:  5'- gCCUGGuuuuugaGGUCGAGGAGGgaaacaugaCCGAGGUGa -3'
miRNA:   3'- aGGACUg------CCGGUUCCUCC---------GGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 51175 0.72 0.507496
Target:  5'- -gCUGugGaGCCGGGGAGGCUgcucGAGGa- -3'
miRNA:   3'- agGACugC-CGGUUCCUCCGG----UUCCac -5'
28917 5' -58.4 NC_006146.1 + 167607 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 90237 0.7 0.585806
Target:  5'- ---aGGCaGCCGAGGgagAGGCCGAGGUa -3'
miRNA:   3'- aggaCUGcCGGUUCC---UCCGGUUCCAc -5'
28917 5' -58.4 NC_006146.1 + 168539 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 147437 0.72 0.470001
Target:  5'- aCCUGgccACGGCCAGGGccucguAGGCCGAGa-- -3'
miRNA:   3'- aGGAC---UGCCGGUUCC------UCCGGUUCcac -5'
28917 5' -58.4 NC_006146.1 + 71381 0.7 0.595803
Target:  5'- cUCCUGACuGCU--GGuGGCCGAGGg- -3'
miRNA:   3'- -AGGACUGcCGGuuCCuCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 41585 0.7 0.625921
Target:  5'- -aCUGGCuGGCCGAGGcggagAGGCCcGGGg- -3'
miRNA:   3'- agGACUG-CCGGUUCC-----UCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 169471 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 67223 0.73 0.413991
Target:  5'- gCCUGGcCGGCCAGgcacaggaagccacGGAGGCUggGGg- -3'
miRNA:   3'- aGGACU-GCCGGUU--------------CCUCCGGuuCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.