miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 12725 1.09 0.001775
Target:  5'- gUCCUGACGGCCAAGGAGGCCAAGGUGg -3'
miRNA:   3'- -AGGACUGCCGGUUCCUCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 11422 0.83 0.110007
Target:  5'- gCCUGcaggaccaGGCCAAGGuGGCCAAGGUGg -3'
miRNA:   3'- aGGACug------CCGGUUCCuCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 41060 0.8 0.177927
Target:  5'- cCCUGGgGGCCucgggguggAGGGAGGCCAGGGa- -3'
miRNA:   3'- aGGACUgCCGG---------UUCCUCCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 48585 0.79 0.186931
Target:  5'- gCCUcGGgGGUCAGGGAGGCCAgaaGGGUGu -3'
miRNA:   3'- aGGA-CUgCCGGUUCCUCCGGU---UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 168539 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 167607 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 170402 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 169471 0.76 0.314523
Target:  5'- cCCUGGgGGCCucGGGGGCgGAGGg- -3'
miRNA:   3'- aGGACUgCCGGuuCCUCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 56978 0.76 0.317364
Target:  5'- cCCUGACGGCCAccuGcugguuaagauagaaGGGGGCCAuggccgaggaggAGGUGg -3'
miRNA:   3'- aGGACUGCCGGU---U---------------CCUCCGGU------------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 83747 0.75 0.321661
Target:  5'- cCCUGugGGCCGugagcaguGGGuGGCCu-GGUGg -3'
miRNA:   3'- aGGACugCCGGU--------UCCuCCGGuuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 61506 0.75 0.351415
Target:  5'- aCC-GACGGCCGuccgaucaGGGAGGCCuccGGUGu -3'
miRNA:   3'- aGGaCUGCCGGU--------UCCUCCGGuu-CCAC- -5'
28917 5' -58.4 NC_006146.1 + 127579 0.75 0.351415
Target:  5'- cCCUgGGCGGCCGAGGccgcgccGGCC-GGGUGa -3'
miRNA:   3'- aGGA-CUGCCGGUUCCu------CCGGuUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 55155 0.74 0.374981
Target:  5'- cCCaaUGuCaGCCGccGGGAGGCCAGGGUGg -3'
miRNA:   3'- aGG--ACuGcCGGU--UCCUCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 149405 0.74 0.38307
Target:  5'- uUCUgguaGACGGCCAGGuGAGGCaucuGGGUGc -3'
miRNA:   3'- -AGGa---CUGCCGGUUC-CUCCGgu--UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 150661 0.74 0.391275
Target:  5'- gCCUGGggUGGCCGGGGAgggguggggaguGGCCAGGGg- -3'
miRNA:   3'- aGGACU--GCCGGUUCCU------------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 141427 0.73 0.408023
Target:  5'- gCCUGGggUGGCCGGGGAgggguggggaguGGCCAGGGa- -3'
miRNA:   3'- aGGACU--GCCGGUUCCU------------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 147583 0.73 0.408023
Target:  5'- gCCUGGggUGGCCGGGGAgggguggggaguGGCCAGGGa- -3'
miRNA:   3'- aGGACU--GCCGGUUCCU------------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 156816 0.73 0.408023
Target:  5'- gCCUGGggUGGCCGGGGAgggguggggaguGGCCAGGGa- -3'
miRNA:   3'- aGGACU--GCCGGUUCCU------------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 153738 0.73 0.408023
Target:  5'- gCCUGGggUGGCCGGGGAgggguggggaguGGCCAGGGa- -3'
miRNA:   3'- aGGACU--GCCGGUUCCU------------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 144505 0.73 0.408023
Target:  5'- gCCUGGggUGGCCGGGGAgggguggggaguGGCCAGGGa- -3'
miRNA:   3'- aGGACU--GCCGGUUCCU------------CCGGUUCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.