miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28918 5' -57.2 NC_006146.1 + 40827 0.66 0.889362
Target:  5'- uGGCcaUGagCUUGGUaagGGGCAggGGGCGCUc -3'
miRNA:   3'- -CCG--ACa-GAGCCGa--CCCGUa-UCUGCGA- -5'
28918 5' -57.2 NC_006146.1 + 12320 1.1 0.001919
Target:  5'- cGGCUGUCUCGGCUGGGCAUAGACGCUg -3'
miRNA:   3'- -CCGACAGAGCCGACCCGUAUCUGCGA- -5'
28918 5' -57.2 NC_006146.1 + 103023 0.71 0.586476
Target:  5'- uGCUgGUCUCGGCcgcuuacuauuuuugGGGCAUuccuugcacgauugAGACGCUg -3'
miRNA:   3'- cCGA-CAGAGCCGa--------------CCCGUA--------------UCUGCGA- -5'
28918 5' -57.2 NC_006146.1 + 47185 0.69 0.719099
Target:  5'- uGGCUGUCgggagccCGaGCUGGaCAcggAGACGCUg -3'
miRNA:   3'- -CCGACAGa------GC-CGACCcGUa--UCUGCGA- -5'
28918 5' -57.2 NC_006146.1 + 108565 0.68 0.757677
Target:  5'- uGGCUGggCUUGGCUGG-CGgcGGCGUc -3'
miRNA:   3'- -CCGACa-GAGCCGACCcGUauCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 44119 0.68 0.79452
Target:  5'- cGGCUGcC-CGGCgaggaggggGGGCA-GGACGUg -3'
miRNA:   3'- -CCGACaGaGCCGa--------CCCGUaUCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 13502 0.67 0.811251
Target:  5'- aGGCUGggaacCUgGGCuacuuuaUGGGCcgAGGCGUg -3'
miRNA:   3'- -CCGACa----GAgCCG-------ACCCGuaUCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 83366 0.67 0.829073
Target:  5'- uGGCcGUCaUGGa-GGGCAUGGAgGCa -3'
miRNA:   3'- -CCGaCAGaGCCgaCCCGUAUCUgCGa -5'
28918 5' -57.2 NC_006146.1 + 43628 0.67 0.837292
Target:  5'- aGGgaGUgggCGGCgGGGCGUGGcCGCc -3'
miRNA:   3'- -CCgaCAga-GCCGaCCCGUAUCuGCGa -5'
28918 5' -57.2 NC_006146.1 + 110871 0.66 0.853176
Target:  5'- cGCUgcGUCUCgGGCUcGGGCGcAGGCGg- -3'
miRNA:   3'- cCGA--CAGAG-CCGA-CCCGUaUCUGCga -5'
28918 5' -57.2 NC_006146.1 + 49082 0.66 0.860828
Target:  5'- gGGCUGaggCUcCGGCUGuGGCucAGGCgGCUu -3'
miRNA:   3'- -CCGACa--GA-GCCGAC-CCGuaUCUG-CGA- -5'
28918 5' -57.2 NC_006146.1 + 124507 0.66 0.868278
Target:  5'- cGGCcugGUCUCGGCccuGGCGagGGACGg- -3'
miRNA:   3'- -CCGa--CAGAGCCGac-CCGUa-UCUGCga -5'
28918 5' -57.2 NC_006146.1 + 88814 0.66 0.87552
Target:  5'- gGGCaUGUUU-GGCUGGGCcu-GAgGCUc -3'
miRNA:   3'- -CCG-ACAGAgCCGACCCGuauCUgCGA- -5'
28918 5' -57.2 NC_006146.1 + 125600 0.66 0.887341
Target:  5'- aGCUGuUCUcCGGCUuuccaccgagggugGGGCAUGGGCu-- -3'
miRNA:   3'- cCGAC-AGA-GCCGA--------------CCCGUAUCUGcga -5'
28918 5' -57.2 NC_006146.1 + 119942 0.69 0.724974
Target:  5'- cGGCgcugcugccggagGUCUCGGUgggGGGuCAggAGACGCc -3'
miRNA:   3'- -CCGa------------CAGAGCCGa--CCC-GUa-UCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 106470 0.69 0.705292
Target:  5'- aGGCUGUCUCGGCgccgagaccccaagUaucaugugcacggGGGCcaagucagacagGUGGGCGCa -3'
miRNA:   3'- -CCGACAGAGCCG--------------A-------------CCCG------------UAUCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 95300 0.71 0.618756
Target:  5'- cGCUGUagaCGGUgGGGCAgUAGGCGCg -3'
miRNA:   3'- cCGACAga-GCCGaCCCGU-AUCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 41614 0.71 0.598554
Target:  5'- gGGCUGg-UCcGCUGGGCccGGGCGCa -3'
miRNA:   3'- -CCGACagAGcCGACCCGuaUCUGCGa -5'
28918 5' -57.2 NC_006146.1 + 33958 0.71 0.588486
Target:  5'- cGCUgGUC-CGGgUGGGCGUGGucCGCUg -3'
miRNA:   3'- cCGA-CAGaGCCgACCCGUAUCu-GCGA- -5'
28918 5' -57.2 NC_006146.1 + 28275 0.66 0.889362
Target:  5'- aGGCcggGUCUCGGguCUGGGgGUcuguGGugGUg -3'
miRNA:   3'- -CCGa--CAGAGCC--GACCCgUA----UCugCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.