Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28919 | 3' | -62 | NC_006146.1 | + | 11363 | 1.09 | 0.000899 |
Target: 5'- gGCGCAGGCGCUGCGCGUCAGGCAGGUg -3' miRNA: 3'- -CGCGUCCGCGACGCGCAGUCCGUCCA- -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 98407 | 0.74 | 0.230943 |
Target: 5'- cCGCAGGCGCUGCaGC--CAGGCAcGGg -3' miRNA: 3'- cGCGUCCGCGACG-CGcaGUCCGU-CCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 51478 | 0.74 | 0.259337 |
Target: 5'- uGgGCGGGgGCUGCgGCGUCGGGaguuGGGa -3' miRNA: 3'- -CgCGUCCgCGACG-CGCAGUCCg---UCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 65481 | 0.72 | 0.32456 |
Target: 5'- uGUGCGGGUGCUGagcuggccgGCGUgGGGCuGGUu -3' miRNA: 3'- -CGCGUCCGCGACg--------CGCAgUCCGuCCA- -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 161442 | 0.71 | 0.369209 |
Target: 5'- cCGCGGGaacccaagGCGCGUgGGGCGGGUa -3' miRNA: 3'- cGCGUCCgcga----CGCGCAgUCCGUCCA- -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 56779 | 0.7 | 0.391438 |
Target: 5'- cGCGCAGGC-CUccucggugaGCGCGgcggccgucuggCGGGCGGGg -3' miRNA: 3'- -CGCGUCCGcGA---------CGCGCa-----------GUCCGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 68174 | 0.7 | 0.409505 |
Target: 5'- cGgGCAGGCGCa--GCGUCAGgacGCGGGc -3' miRNA: 3'- -CgCGUCCGCGacgCGCAGUC---CGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 64274 | 0.7 | 0.417887 |
Target: 5'- cGCaGCAGGCGCUGCG-G-CAaucGCGGGUg -3' miRNA: 3'- -CG-CGUCCGCGACGCgCaGUc--CGUCCA- -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 50733 | 0.7 | 0.417887 |
Target: 5'- aGCGgGGGCGacgGgGCGUCGGGaAGGg -3' miRNA: 3'- -CGCgUCCGCga-CgCGCAGUCCgUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 40280 | 0.7 | 0.424668 |
Target: 5'- gGCGCGGGCGgaG-GCGggccaaagaggcCGGGCAGGc -3' miRNA: 3'- -CGCGUCCGCgaCgCGCa-----------GUCCGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 66571 | 0.7 | 0.426373 |
Target: 5'- gGCGCAGGCG----GCG-CAGGCAGGc -3' miRNA: 3'- -CGCGUCCGCgacgCGCaGUCCGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 151152 | 0.7 | 0.43496 |
Target: 5'- uCGCAGGUGCccaGCGUCA-GCAGGa -3' miRNA: 3'- cGCGUCCGCGacgCGCAGUcCGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 112540 | 0.7 | 0.438423 |
Target: 5'- uUGCAGGCGCUG-GUGUagacgagguccaugcCAGGCuGGUc -3' miRNA: 3'- cGCGUCCGCGACgCGCA---------------GUCCGuCCA- -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 13557 | 0.7 | 0.443647 |
Target: 5'- gGCGcCGGGCGCcgggcUGCGCaagCAGGcCGGGg -3' miRNA: 3'- -CGC-GUCCGCG-----ACGCGca-GUCC-GUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 147557 | 0.69 | 0.45243 |
Target: 5'- cGCGcCAGGCGCUGaG-GUCGGucuGCAGGg -3' miRNA: 3'- -CGC-GUCCGCGACgCgCAGUC---CGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 155430 | 0.69 | 0.478423 |
Target: 5'- cGCGCAGGCacagcgucucgGUcagggucucgcucUGCuGCGcCAGGCAGGa -3' miRNA: 3'- -CGCGUCCG-----------CG-------------ACG-CGCaGUCCGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 21247 | 0.69 | 0.487555 |
Target: 5'- cGUGCAGGCGCgcugccgGCGCGUgcucgaccuggugCuGGCGGa- -3' miRNA: 3'- -CGCGUCCGCGa------CGCGCA-------------GuCCGUCca -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 128204 | 0.69 | 0.497696 |
Target: 5'- -aGCGGGCGCUGgGgGgcucugccagccUCAGGCAGc- -3' miRNA: 3'- cgCGUCCGCGACgCgC------------AGUCCGUCca -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 43892 | 0.68 | 0.522969 |
Target: 5'- uGCGCAGGCugggagcccacagaGCUccgggaccGCGUcgcccggcaGUCGGGCGGGg -3' miRNA: 3'- -CGCGUCCG--------------CGA--------CGCG---------CAGUCCGUCCa -5' |
|||||||
28919 | 3' | -62 | NC_006146.1 | + | 110853 | 0.68 | 0.524862 |
Target: 5'- gGCGCccgaucagaGGGaCGCUGCgucucgggcucggGCG-CAGGCGGGg -3' miRNA: 3'- -CGCG---------UCC-GCGACG-------------CGCaGUCCGUCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home