miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 3' -62 NC_006146.1 + 11363 1.09 0.000899
Target:  5'- gGCGCAGGCGCUGCGCGUCAGGCAGGUg -3'
miRNA:   3'- -CGCGUCCGCGACGCGCAGUCCGUCCA- -5'
28919 3' -62 NC_006146.1 + 13557 0.7 0.443647
Target:  5'- gGCGcCGGGCGCcgggcUGCGCaagCAGGcCGGGg -3'
miRNA:   3'- -CGC-GUCCGCG-----ACGCGca-GUCC-GUCCa -5'
28919 3' -62 NC_006146.1 + 14624 0.66 0.622902
Target:  5'- cUGCuGGCGCUGCGUGggGGaGCucauGGUg -3'
miRNA:   3'- cGCGuCCGCGACGCGCagUC-CGu---CCA- -5'
28919 3' -62 NC_006146.1 + 15935 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 19012 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 19969 0.66 0.66227
Target:  5'- cCGgGGGCGuCUGCGagGUCAGG-AGGc -3'
miRNA:   3'- cGCgUCCGC-GACGCg-CAGUCCgUCCa -5'
28919 3' -62 NC_006146.1 + 21247 0.69 0.487555
Target:  5'- cGUGCAGGCGCgcugccgGCGCGUgcucgaccuggugCuGGCGGa- -3'
miRNA:   3'- -CGCGUCCGCGa------CGCGCA-------------GuCCGUCca -5'
28919 3' -62 NC_006146.1 + 22090 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 25168 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 28246 0.66 0.66227
Target:  5'- gGCGCcuGGGCgagGCUGgGUGgcuGGGCAGGc -3'
miRNA:   3'- -CGCG--UCCG---CGACgCGCag-UCCGUCCa -5'
28919 3' -62 NC_006146.1 + 40280 0.7 0.424668
Target:  5'- gGCGCGGGCGgaG-GCGggccaaagaggcCGGGCAGGc -3'
miRNA:   3'- -CGCGUCCGCgaCgCGCa-----------GUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 43351 0.68 0.535314
Target:  5'- -aGCAGGCGCaGCcCGU--GGCAGGg -3'
miRNA:   3'- cgCGUCCGCGaCGcGCAguCCGUCCa -5'
28919 3' -62 NC_006146.1 + 43892 0.68 0.522969
Target:  5'- uGCGCAGGCugggagcccacagaGCUccgggaccGCGUcgcccggcaGUCGGGCGGGg -3'
miRNA:   3'- -CGCGUCCG--------------CGA--------CGCG---------CAGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 44747 0.68 0.525809
Target:  5'- cCGCGGGCgGCUGUGguugucggggccCGgCGGGCGGGg -3'
miRNA:   3'- cGCGUCCG-CGACGC------------GCaGUCCGUCCa -5'
28919 3' -62 NC_006146.1 + 50733 0.7 0.417887
Target:  5'- aGCGgGGGCGacgGgGCGUCGGGaAGGg -3'
miRNA:   3'- -CGCgUCCGCga-CgCGCAGUCCgUCCa -5'
28919 3' -62 NC_006146.1 + 51478 0.74 0.259337
Target:  5'- uGgGCGGGgGCUGCgGCGUCGGGaguuGGGa -3'
miRNA:   3'- -CgCGUCCgCGACG-CGCAGUCCg---UCCa -5'
28919 3' -62 NC_006146.1 + 53471 0.66 0.642602
Target:  5'- gGCGCGGGUGCcuCGUcgGUCAGGgcCGGGg -3'
miRNA:   3'- -CGCGUCCGCGacGCG--CAGUCC--GUCCa -5'
28919 3' -62 NC_006146.1 + 54023 0.67 0.613059
Target:  5'- -aGCAGGCacuGCUGCGCcugGcCGGGCcGGa -3'
miRNA:   3'- cgCGUCCG---CGACGCG---CaGUCCGuCCa -5'
28919 3' -62 NC_006146.1 + 56251 0.67 0.593418
Target:  5'- gGCGgAGGCGggGC-CGUCcucGGCGGGg -3'
miRNA:   3'- -CGCgUCCGCgaCGcGCAGu--CCGUCCa -5'
28919 3' -62 NC_006146.1 + 56779 0.7 0.391438
Target:  5'- cGCGCAGGC-CUccucggugaGCGCGgcggccgucuggCGGGCGGGg -3'
miRNA:   3'- -CGCGUCCGcGA---------CGCGCa-----------GUCCGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.