miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 23120 0.74 0.620294
Target:  5'- --cGCUGCUcuuccugGGAGAGGCcgGGAGCCUGg -3'
miRNA:   3'- ccuCGACGA-------CCUUUUCG--UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 24191 0.66 0.959502
Target:  5'- aGGGCaGa--GGAGGGCuGGGCCUGCg -3'
miRNA:   3'- cCUCGaCgacCUUUUCGuCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 25174 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 27910 0.67 0.94736
Target:  5'- gGGAGCUGCUcccacggccaaGGGcuAGGGCGGAacccCCUGg -3'
miRNA:   3'- -CCUCGACGA-----------CCU--UUUCGUCUc---GGACg -5'
28919 5' -53.4 NC_006146.1 + 28252 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 35794 0.67 0.941894
Target:  5'- cGGAGCaaacccaaaccCUGGGAAAGCgaGGGGCCcGUg -3'
miRNA:   3'- -CCUCGac---------GACCUUUUCG--UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 36112 0.69 0.890896
Target:  5'- gGGAcccGCUGCUGGGugGGGGUuguGGCCUGg -3'
miRNA:   3'- -CCU---CGACGACCU--UUUCGuc-UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 36221 0.67 0.942829
Target:  5'- gGGAGCgcaagccgGCcgGGGagGAGGCAGGGCg-GCu -3'
miRNA:   3'- -CCUCGa-------CGa-CCU--UUUCGUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 37879 0.66 0.96308
Target:  5'- aGAGCagGCcGGGcuGGgAGAGuCCUGCc -3'
miRNA:   3'- cCUCGa-CGaCCUuuUCgUCUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 38111 0.74 0.652715
Target:  5'- -cAGCUGCU-GAGcAGCugcGAGCCUGCa -3'
miRNA:   3'- ccUCGACGAcCUUuUCGu--CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 38675 0.66 0.973588
Target:  5'- --cGCUGCUuGAAAaauggcaaccGGCAGcuucucuuccgguuaAGCCUGCg -3'
miRNA:   3'- ccuCGACGAcCUUU----------UCGUC---------------UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 39701 0.68 0.910434
Target:  5'- -cAGCgccGCUccGGA--GGCAGAGgCCUGCa -3'
miRNA:   3'- ccUCGa--CGA--CCUuuUCGUCUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 39861 0.73 0.662108
Target:  5'- gGGGGCUGUgugcccGGggGAGgAGgcugaggcugagcGGCCUGCg -3'
miRNA:   3'- -CCUCGACGa-----CCuuUUCgUC-------------UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 39967 0.67 0.94736
Target:  5'- -cGGCUGgggaaGGAGAGGCuGAGgCUGCu -3'
miRNA:   3'- ccUCGACga---CCUUUUCGuCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 40027 0.67 0.951646
Target:  5'- gGGGGcCUGCUGGG--GGCcGuAGCCgacuccgGCg -3'
miRNA:   3'- -CCUC-GACGACCUuuUCGuC-UCGGa------CG- -5'
28919 5' -53.4 NC_006146.1 + 42287 0.67 0.951646
Target:  5'- uGGuGGCggGgaGGAGGAGCGGgAGCCggagUGCc -3'
miRNA:   3'- -CC-UCGa-CgaCCUUUUCGUC-UCGG----ACG- -5'
28919 5' -53.4 NC_006146.1 + 42685 0.71 0.792966
Target:  5'- uGGGCUGcCUGaGGcuGGCAGAGCCccccaGCg -3'
miRNA:   3'- cCUCGAC-GAC-CUuuUCGUCUCGGa----CG- -5'
28919 5' -53.4 NC_006146.1 + 43218 0.67 0.938053
Target:  5'- gGGGcGCUGCUGGu-GAGaGGAGCCc-- -3'
miRNA:   3'- -CCU-CGACGACCuuUUCgUCUCGGacg -5'
28919 5' -53.4 NC_006146.1 + 43276 0.69 0.876678
Target:  5'- aGGGCgGcCUGGAGGuccGGCAGGuGCCUaGCg -3'
miRNA:   3'- cCUCGaC-GACCUUU---UCGUCU-CGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 44632 0.7 0.819183
Target:  5'- uGGGGUggaGCUGGAGAGGCgucucccaagcccGGGcGCCUGg -3'
miRNA:   3'- -CCUCGa--CGACCUUUUCG-------------UCU-CGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.