miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 7665 0.66 0.970755
Target:  5'- cGGGGUUcCUGGA---GCAGcgcuacccugccuacGGCCUGCc -3'
miRNA:   3'- -CCUCGAcGACCUuuuCGUC---------------UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 8947 0.7 0.837248
Target:  5'- --uGggGCUGGGGAAGUuuAGCCUGCu -3'
miRNA:   3'- ccuCgaCGACCUUUUCGucUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 9940 0.7 0.845553
Target:  5'- aGGAGCaGCUGagcGAAAAGCcuGGCCaugGCg -3'
miRNA:   3'- -CCUCGaCGAC---CUUUUCGucUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 11401 1.15 0.002026
Target:  5'- uGGAGCUGCUGGAAAAGCAGAGCCUGCa -3'
miRNA:   3'- -CCUCGACGACCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 12862 0.71 0.811197
Target:  5'- uGGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- -CCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 14009 0.66 0.969563
Target:  5'- cGGGCuggUGCUGGAA-GGCGGAGg--GCa -3'
miRNA:   3'- cCUCG---ACGACCUUuUCGUCUCggaCG- -5'
28919 5' -53.4 NC_006146.1 + 14119 0.72 0.72489
Target:  5'- cGGGGCUGCUGGc--GGCGGccuacAGCCagGUg -3'
miRNA:   3'- -CCUCGACGACCuuuUCGUC-----UCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 14164 0.72 0.748861
Target:  5'- uGGAGCUgagcgucugcgccagGCUGGAccccCGGAGCCUGg -3'
miRNA:   3'- -CCUCGA---------------CGACCUuuucGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 14311 0.8 0.338828
Target:  5'- uGGAGCuggcgcaccUGCUGGAGAAcucacGCAGGGCCguUGCg -3'
miRNA:   3'- -CCUCG---------ACGACCUUUU-----CGUCUCGG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 14554 0.77 0.459951
Target:  5'- uGGAGCUGCUGGGccgcuuucGGGGCGuGAGCCc-- -3'
miRNA:   3'- -CCUCGACGACCU--------UUUCGU-CUCGGacg -5'
28919 5' -53.4 NC_006146.1 + 14628 0.66 0.96308
Target:  5'- uGGcGCUGCgUGGggGAGCucauGGUgCUGCc -3'
miRNA:   3'- -CCuCGACG-ACCuuUUCGuc--UCG-GACG- -5'
28919 5' -53.4 NC_006146.1 + 14935 0.69 0.897651
Target:  5'- cGGAGCUGCucuacUGGAAcucuGGC--AGCCaUGCu -3'
miRNA:   3'- -CCUCGACG-----ACCUUu---UCGucUCGG-ACG- -5'
28919 5' -53.4 NC_006146.1 + 15033 0.67 0.938053
Target:  5'- aGGGGC-GcCUGGccAGGGCccgccGGGCCUGCg -3'
miRNA:   3'- -CCUCGaC-GACCu-UUUCGu----CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 15293 0.68 0.904165
Target:  5'- cGGAGCgagggGgaGGAGGGGCcGGAgGCCaGCc -3'
miRNA:   3'- -CCUCGa----CgaCCUUUUCG-UCU-CGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 15941 0.67 0.94736
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCgGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 18713 0.69 0.869224
Target:  5'- uGGGCUGCUcGAgGAGGCAGAGaCUGa -3'
miRNA:   3'- cCUCGACGAcCU-UUUCGUCUCgGACg -5'
28919 5' -53.4 NC_006146.1 + 19018 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 21216 0.67 0.94736
Target:  5'- uGGAGCUGgUcaGGAAAAc---GGCCUGCa -3'
miRNA:   3'- -CCUCGACgA--CCUUUUcgucUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 21916 0.66 0.97248
Target:  5'- aGGAGggGCggGGAAGcuGGCAGAGgCCa-- -3'
miRNA:   3'- -CCUCgaCGa-CCUUU--UCGUCUC-GGacg -5'
28919 5' -53.4 NC_006146.1 + 22096 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.