miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 11401 1.15 0.002026
Target:  5'- uGGAGCUGCUGGAAAAGCAGAGCCUGCa -3'
miRNA:   3'- -CCUCGACGACCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 92221 0.83 0.230862
Target:  5'- uGGGGCUGCUGcuGggGGGCGGgcccGGCCUGUg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 149265 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 146187 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 143109 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 158500 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 155421 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 152343 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 103089 0.82 0.267524
Target:  5'- cGGAGCUGUUuacuuccgaGGcgGGGCAGAGCCUGg -3'
miRNA:   3'- -CCUCGACGA---------CCuuUUCGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92072 0.8 0.316073
Target:  5'- uGGGGCUGCUGcuGggGGGCGGcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 14311 0.8 0.338828
Target:  5'- uGGAGCuggcgcaccUGCUGGAGAAcucacGCAGGGCCguUGCg -3'
miRNA:   3'- -CCUCG---------ACGACCUUUU-----CGUCUCGG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 92131 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92012 0.8 0.346672
Target:  5'- uGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92101 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92311 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92161 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92281 0.8 0.346672
Target:  5'- uGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92191 0.78 0.441237
Target:  5'- nGGGGCUGCUGcuGggGGGCGG-GCCcgGCc -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 92042 0.78 0.441237
Target:  5'- nGGGGCUGCUGcuGggGGGCGG-GCCcgGCc -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 150530 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.