miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 96073 0.76 0.498587
Target:  5'- aGGAGCUGCacaccaGGAuua--AGAGCCUGCg -3'
miRNA:   3'- -CCUCGACGa-----CCUuuucgUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 123331 0.72 0.734944
Target:  5'- -cAGCUGCUGGAAGAGgGGgugacgguuguaGGCC-GCg -3'
miRNA:   3'- ccUCGACGACCUUUUCgUC------------UCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 79774 0.71 0.782676
Target:  5'- cGAGaggGCUGGAGAauacuuaGGCGGAGCggGCg -3'
miRNA:   3'- cCUCga-CGACCUUU-------UCGUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 170285 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 127726 0.76 0.518443
Target:  5'- aGGAGCUGaUGGGGcuGGGCcggAGAGCCUGg -3'
miRNA:   3'- -CCUCGACgACCUU--UUCG---UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 111890 0.75 0.569321
Target:  5'- cGGGGCagUGCUGGu-GAGCAGGGCUUcGUu -3'
miRNA:   3'- -CCUCG--ACGACCuuUUCGUCUCGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 167379 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 168311 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 55025 0.73 0.683935
Target:  5'- gGGGGCggGCgGGAugggggucGGGGcCGGGGCCUGCc -3'
miRNA:   3'- -CCUCGa-CGaCCU--------UUUC-GUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 149451 0.72 0.728922
Target:  5'- aGAGCuUGCggcucagcuccgUGGAGAAGCAGAGCUcccccauggggacccUGCc -3'
miRNA:   3'- cCUCG-ACG------------ACCUUUUCGUCUCGG---------------ACG- -5'
28919 5' -53.4 NC_006146.1 + 60915 0.73 0.70454
Target:  5'- aGGAGCUGUuucgcaccgcggUGGA--GGUAGAGaCUGCu -3'
miRNA:   3'- -CCUCGACG------------ACCUuuUCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 170174 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 149953 0.76 0.508474
Target:  5'- aGGGGCgcccagGCguugGGAGuggGGGcCAGGGCCUGCa -3'
miRNA:   3'- -CCUCGa-----CGa---CCUU---UUC-GUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 100275 0.73 0.70454
Target:  5'- uGGAGCcuccuaGCggGGGcuGGCAG-GCCUGCa -3'
miRNA:   3'- -CCUCGa-----CGa-CCUuuUCGUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 153544 0.76 0.508474
Target:  5'- uGGGGCUGCuUGGGAAcGGUGGAG-CUGCc -3'
miRNA:   3'- -CCUCGACG-ACCUUU-UCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 169243 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 95521 0.72 0.72489
Target:  5'- gGGAGCUGUcGGGu--GCGGcGCCUGg -3'
miRNA:   3'- -CCUCGACGaCCUuuuCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 166082 0.71 0.77413
Target:  5'- uGGuguGCUGCUGGugu-GCuggaGGAGCCUGa -3'
miRNA:   3'- -CCu--CGACGACCuuuuCG----UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 142554 0.76 0.508474
Target:  5'- cGGuGCaGCcuaGGcuAGGCGGAGCCUGCg -3'
miRNA:   3'- -CCuCGaCGa--CCuuUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 51831 0.74 0.631801
Target:  5'- cGGGGCgGCgUGGAGGGGggcuCGGGGCCUGg -3'
miRNA:   3'- -CCUCGaCG-ACCUUUUC----GUCUCGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.