miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2892 3' -53.9 NC_001493.1 + 30630 0.66 0.961703
Target:  5'- gCCUGUACggccUUGuuCAGGAUGUcguucuguUCCAGa -3'
miRNA:   3'- gGGGCAUG----AGCugGUCCUACA--------AGGUC- -5'
2892 3' -53.9 NC_001493.1 + 48238 0.66 0.961703
Target:  5'- aCCCG-AUagGGCCAGGAUGUUg--- -3'
miRNA:   3'- gGGGCaUGagCUGGUCCUACAAgguc -5'
2892 3' -53.9 NC_001493.1 + 18844 0.66 0.961703
Target:  5'- -gUCGUGCcCGACCGGuGugcGUUCCGGg -3'
miRNA:   3'- ggGGCAUGaGCUGGUC-Cua-CAAGGUC- -5'
2892 3' -53.9 NC_001493.1 + 48163 0.66 0.961703
Target:  5'- gCCCGacGCUCGugGCCGGGuuggGggCCGGg -3'
miRNA:   3'- gGGGCa-UGAGC--UGGUCCua--CaaGGUC- -5'
2892 3' -53.9 NC_001493.1 + 87825 0.66 0.954235
Target:  5'- uCCUCGUACgcc-CCGGGggGUaggUCCAGg -3'
miRNA:   3'- -GGGGCAUGagcuGGUCCuaCA---AGGUC- -5'
2892 3' -53.9 NC_001493.1 + 58900 0.66 0.953837
Target:  5'- uCCCCGUGCUgGACCcaguuAGGGcccaUGUguuacggUCCGu -3'
miRNA:   3'- -GGGGCAUGAgCUGG-----UCCU----ACA-------AGGUc -5'
2892 3' -53.9 NC_001493.1 + 102239 0.66 0.950155
Target:  5'- uCCCCGUugUgaggCGGCCAGGGUcg-CguGg -3'
miRNA:   3'- -GGGGCAugA----GCUGGUCCUAcaaGguC- -5'
2892 3' -53.9 NC_001493.1 + 34410 0.66 0.94584
Target:  5'- aCCCaCGUGCUCGAUCAcGGgcGU--CAGa -3'
miRNA:   3'- -GGG-GCAUGAGCUGGU-CCuaCAagGUC- -5'
2892 3' -53.9 NC_001493.1 + 109002 0.67 0.936491
Target:  5'- uCCCCGUGCggCGGcuguCCAGGgcGUcguugUCCAu -3'
miRNA:   3'- -GGGGCAUGa-GCU----GGUCCuaCA-----AGGUc -5'
2892 3' -53.9 NC_001493.1 + 36891 0.67 0.926174
Target:  5'- cCCCCGcagucgUUCGGCCAGGGUuacGgaCCGGa -3'
miRNA:   3'- -GGGGCau----GAGCUGGUCCUA---CaaGGUC- -5'
2892 3' -53.9 NC_001493.1 + 52078 0.68 0.914884
Target:  5'- aCCCaggaUACUCGcggGGGGUGUUCCGGg -3'
miRNA:   3'- gGGGc---AUGAGCuggUCCUACAAGGUC- -5'
2892 3' -53.9 NC_001493.1 + 109313 0.68 0.902626
Target:  5'- aCCCCGUGCaUGugCAGGuac-UCCAa -3'
miRNA:   3'- -GGGGCAUGaGCugGUCCuacaAGGUc -5'
2892 3' -53.9 NC_001493.1 + 16371 0.68 0.889419
Target:  5'- uCCCCGacccaggugcACUCGGCgAGGAUGga-CAGg -3'
miRNA:   3'- -GGGGCa---------UGAGCUGgUCCUACaagGUC- -5'
2892 3' -53.9 NC_001493.1 + 131925 0.68 0.889419
Target:  5'- uCCCCGacccaggugcACUCGGCgAGGAUGga-CAGg -3'
miRNA:   3'- -GGGGCa---------UGAGCUGgUCCUACaagGUC- -5'
2892 3' -53.9 NC_001493.1 + 28528 0.69 0.875289
Target:  5'- uUCCGUG-UCGACCAGGGUGcgCUu- -3'
miRNA:   3'- gGGGCAUgAGCUGGUCCUACaaGGuc -5'
2892 3' -53.9 NC_001493.1 + 41308 0.7 0.827782
Target:  5'- aCCCCGaACaaGAUCGGGAUGaUCUGGa -3'
miRNA:   3'- -GGGGCaUGagCUGGUCCUACaAGGUC- -5'
2892 3' -53.9 NC_001493.1 + 17841 0.7 0.826077
Target:  5'- uCCCCGUGaggUCGGCgAGGAUGgucgcgcaaaugUCCAc -3'
miRNA:   3'- -GGGGCAUg--AGCUGgUCCUACa-----------AGGUc -5'
2892 3' -53.9 NC_001493.1 + 133395 0.7 0.826077
Target:  5'- uCCCCGUGaggUCGGCgAGGAUGgucgcgcaaaugUCCAc -3'
miRNA:   3'- -GGGGCAUg--AGCUGgUCCUACa-----------AGGUc -5'
2892 3' -53.9 NC_001493.1 + 53306 0.7 0.801486
Target:  5'- gUCUCGc-CUCGACCAGGA-GUUCgGGa -3'
miRNA:   3'- -GGGGCauGAGCUGGUCCUaCAAGgUC- -5'
2892 3' -53.9 NC_001493.1 + 27639 0.72 0.72517
Target:  5'- gCCCCGaUACcacCGGCCGGGAcaccgaucaGUUCCAGu -3'
miRNA:   3'- -GGGGC-AUGa--GCUGGUCCUa--------CAAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.