miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28920 5' -54.1 NC_006146.1 + 166532 0.66 0.959025
Target:  5'- ---aAGCGgCAGGGUCCUUgGCAGGu -3'
miRNA:   3'- guagUUGCaGUUCCGGGAGgUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 160732 0.73 0.646344
Target:  5'- --aCAGCGUaUAGGGCCCUgaACAGGAg -3'
miRNA:   3'- guaGUUGCA-GUUCCGGGAggUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 159038 0.73 0.676187
Target:  5'- aGUCAACGUC-GGGCCCgCCccaagcccgagaaGCAGGGc -3'
miRNA:   3'- gUAGUUGCAGuUCCGGGaGG-------------UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 148038 0.67 0.937739
Target:  5'- gAUCGGCGUUggGGCCCaUgAUgaugAGGAg -3'
miRNA:   3'- gUAGUUGCAGuuCCGGGaGgUG----UCCU- -5'
28920 5' -54.1 NC_006146.1 + 140401 0.71 0.794778
Target:  5'- uGUCAGCucuguGUUggGGCCCgUUgGCAGGAa -3'
miRNA:   3'- gUAGUUG-----CAGuuCCGGG-AGgUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 137982 0.69 0.852122
Target:  5'- --gCGGCGUCAaaugcuggggugcaAGGCCCUCCAUAc-- -3'
miRNA:   3'- guaGUUGCAGU--------------UCCGGGAGGUGUccu -5'
28920 5' -54.1 NC_006146.1 + 130805 0.68 0.89783
Target:  5'- gCGUgAGCGagcugCAgcacgcgcugcAGGCCCUCCGcCGGGAg -3'
miRNA:   3'- -GUAgUUGCa----GU-----------UCCGGGAGGU-GUCCU- -5'
28920 5' -54.1 NC_006146.1 + 129618 0.78 0.42016
Target:  5'- cCGUCucCGUCGccGGGUCCUCCGCGGGc -3'
miRNA:   3'- -GUAGuuGCAGU--UCCGGGAGGUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 125850 0.66 0.955236
Target:  5'- uCAUCAAgcccaaggccCG-CGAGGCCCUCCucgaAGGc -3'
miRNA:   3'- -GUAGUU----------GCaGUUCCGGGAGGug--UCCu -5'
28920 5' -54.1 NC_006146.1 + 124956 0.67 0.942471
Target:  5'- ---gAGCGUCGAGGUCC-CCAgAGaGAc -3'
miRNA:   3'- guagUUGCAGUUCCGGGaGGUgUC-CU- -5'
28920 5' -54.1 NC_006146.1 + 122656 0.69 0.854493
Target:  5'- --aCGGCGgcgGGGGCCCUCCGCGcGGc -3'
miRNA:   3'- guaGUUGCag-UUCCGGGAGGUGU-CCu -5'
28920 5' -54.1 NC_006146.1 + 118071 0.67 0.942471
Target:  5'- --gCGGCGgCucGGCCCUCCGCAuccuGGGc -3'
miRNA:   3'- guaGUUGCaGuuCCGGGAGGUGU----CCU- -5'
28920 5' -54.1 NC_006146.1 + 116246 0.67 0.937739
Target:  5'- gGUCuACGaCGGGGcCCCUCCAaugccCGGGGa -3'
miRNA:   3'- gUAGuUGCaGUUCC-GGGAGGU-----GUCCU- -5'
28920 5' -54.1 NC_006146.1 + 115783 0.66 0.951217
Target:  5'- aCAUgGAgGUgGAGGCCCUggagCUgaACAGGAu -3'
miRNA:   3'- -GUAgUUgCAgUUCCGGGA----GG--UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 106655 0.66 0.955236
Target:  5'- --cCGGCugGUCAGGGCCgUCCucuccccgggcACGGGAu -3'
miRNA:   3'- guaGUUG--CAGUUCCGGgAGG-----------UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 99126 0.66 0.962587
Target:  5'- --cCGGCcUC-AGGCgUCUCCACAGGGg -3'
miRNA:   3'- guaGUUGcAGuUCCG-GGAGGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 96371 0.72 0.737679
Target:  5'- gCAUCuuUGUC-GGGCUCUgCCGCGGGAc -3'
miRNA:   3'- -GUAGuuGCAGuUCCGGGA-GGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 69865 0.66 0.955236
Target:  5'- gGUCgGGCGUaGAGGCCCaggUCCACGGc- -3'
miRNA:   3'- gUAG-UUGCAgUUCCGGG---AGGUGUCcu -5'
28920 5' -54.1 NC_006146.1 + 69612 0.68 0.922089
Target:  5'- ---aGACGUCcAGGCCCacgUCCcCGGGGu -3'
miRNA:   3'- guagUUGCAGuUCCGGG---AGGuGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 63356 0.68 0.91044
Target:  5'- --gUAACuGggcaCAGGGCCCUCCugGGGc -3'
miRNA:   3'- guaGUUG-Ca---GUUCCGGGAGGugUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.