miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28920 5' -54.1 NC_006146.1 + 159038 0.73 0.676187
Target:  5'- aGUCAACGUC-GGGCCCgCCccaagcccgagaaGCAGGGc -3'
miRNA:   3'- gUAGUUGCAGuUCCGGGaGG-------------UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 166532 0.66 0.959025
Target:  5'- ---aAGCGgCAGGGUCCUUgGCAGGu -3'
miRNA:   3'- guagUUGCaGUUCCGGGAGgUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 53322 0.66 0.962587
Target:  5'- aGUCcgagccCGagGAGGCCCggcggCCGCGGGGc -3'
miRNA:   3'- gUAGuu----GCagUUCCGGGa----GGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 43504 0.66 0.964949
Target:  5'- --cCGGCGgCGGGGCCCagccccaagacaccUCCACgAGGGg -3'
miRNA:   3'- guaGUUGCaGUUCCGGG--------------AGGUG-UCCU- -5'
28920 5' -54.1 NC_006146.1 + 130805 0.68 0.89783
Target:  5'- gCGUgAGCGagcugCAgcacgcgcugcAGGCCCUCCGcCGGGAg -3'
miRNA:   3'- -GUAgUUGCa----GU-----------UCCGGGAGGU-GUCCU- -5'
28920 5' -54.1 NC_006146.1 + 58379 0.68 0.904254
Target:  5'- -uUCGAgGUgAcccAGGCCCUCCACcGGc -3'
miRNA:   3'- guAGUUgCAgU---UCCGGGAGGUGuCCu -5'
28920 5' -54.1 NC_006146.1 + 69612 0.68 0.922089
Target:  5'- ---aGACGUCcAGGCCCacgUCCcCGGGGu -3'
miRNA:   3'- guagUUGCAGuUCCGGG---AGGuGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 52957 0.78 0.411347
Target:  5'- cCGUUAcCGuUCAuGGCCCUCCGCGGGGc -3'
miRNA:   3'- -GUAGUuGC-AGUuCCGGGAGGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 46038 0.77 0.456523
Target:  5'- ---aGGCGaCGGGGCCCUCCAgGGGAc -3'
miRNA:   3'- guagUUGCaGUUCCGGGAGGUgUCCU- -5'
28920 5' -54.1 NC_006146.1 + 115783 0.66 0.951217
Target:  5'- aCAUgGAgGUgGAGGCCCUggagCUgaACAGGAu -3'
miRNA:   3'- -GUAgUUgCAgUUCCGGGA----GG--UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 56532 0.67 0.946963
Target:  5'- cCAUCAgcagcugacGCGUCAcgcgggccAGGCCCccguccaccUCCGuCAGGGg -3'
miRNA:   3'- -GUAGU---------UGCAGU--------UCCGGG---------AGGU-GUCCU- -5'
28920 5' -54.1 NC_006146.1 + 55043 0.71 0.766777
Target:  5'- gGUCGGgGcCGGGGCCUgCCACAGGc -3'
miRNA:   3'- gUAGUUgCaGUUCCGGGaGGUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 125850 0.66 0.955236
Target:  5'- uCAUCAAgcccaaggccCG-CGAGGCCCUCCucgaAGGc -3'
miRNA:   3'- -GUAGUU----------GCaGUUCCGGGAGGug--UCCu -5'
28920 5' -54.1 NC_006146.1 + 140401 0.71 0.794778
Target:  5'- uGUCAGCucuguGUUggGGCCCgUUgGCAGGAa -3'
miRNA:   3'- gUAGUUG-----CAGuuCCGGG-AGgUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 148038 0.67 0.937739
Target:  5'- gAUCGGCGUUggGGCCCaUgAUgaugAGGAg -3'
miRNA:   3'- gUAGUUGCAGuuCCGGGaGgUG----UCCU- -5'
28920 5' -54.1 NC_006146.1 + 69865 0.66 0.955236
Target:  5'- gGUCgGGCGUaGAGGCCCaggUCCACGGc- -3'
miRNA:   3'- gUAG-UUGCAgUUCCGGG---AGGUGUCcu -5'
28920 5' -54.1 NC_006146.1 + 99126 0.66 0.962587
Target:  5'- --cCGGCcUC-AGGCgUCUCCACAGGGg -3'
miRNA:   3'- guaGUUGcAGuUCCG-GGAGGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 50269 0.68 0.891171
Target:  5'- uCGUCcuuCGUCGGGGCCaaggggCGCAGGAg -3'
miRNA:   3'- -GUAGuu-GCAGUUCCGGgag---GUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 49872 0.68 0.91044
Target:  5'- cCAUCAcCGUCGggaggcugGGGUCCUCCgGUAGGAg -3'
miRNA:   3'- -GUAGUuGCAGU--------UCCGGGAGG-UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 160732 0.73 0.646344
Target:  5'- --aCAGCGUaUAGGGCCCUgaACAGGAg -3'
miRNA:   3'- guaGUUGCA-GUUCCGGGAggUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.