Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28920 | 5' | -54.1 | NC_006146.1 | + | 11150 | 0.66 | 0.965928 |
Target: 5'- gGUgGugGUCAcggAGGCauucaaggagcgCCUCUACGGGGg -3' miRNA: 3'- gUAgUugCAGU---UCCG------------GGAGGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 10892 | 1.09 | 0.004732 |
Target: 5'- gCAUCAACGUCAAGGCCCUCCACAGGAg -3' miRNA: 3'- -GUAGUUGCAGUUCCGGGAGGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 61929 | 0.78 | 0.394067 |
Target: 5'- cCAUCAGgGgcucCAGGGCCCuggUCCACGGGAc -3' miRNA: 3'- -GUAGUUgCa---GUUCCGGG---AGGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 129618 | 0.78 | 0.42016 |
Target: 5'- cCGUCucCGUCGccGGGUCCUCCGCGGGc -3' miRNA: 3'- -GUAGuuGCAGU--UCCGGGAGGUGUCCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 11017 | 0.75 | 0.553973 |
Target: 5'- --cCGGCcUCGAGGCCCUCUGCgAGGAg -3' miRNA: 3'- guaGUUGcAGUUCCGGGAGGUG-UCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 96371 | 0.72 | 0.737679 |
Target: 5'- gCAUCuuUGUC-GGGCUCUgCCGCGGGAc -3' miRNA: 3'- -GUAGuuGCAGuUCCGGGA-GGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 36734 | 0.7 | 0.838346 |
Target: 5'- -cUCGGCGUgcAGGCCCcccucuuaggguUCCGCAGGc -3' miRNA: 3'- guAGUUGCAguUCCGGG------------AGGUGUCCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 137982 | 0.69 | 0.852122 |
Target: 5'- --gCGGCGUCAaaugcuggggugcaAGGCCCUCCAUAc-- -3' miRNA: 3'- guaGUUGCAGU--------------UCCGGGAGGUGUccu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 122656 | 0.69 | 0.854493 |
Target: 5'- --aCGGCGgcgGGGGCCCUCCGCGcGGc -3' miRNA: 3'- guaGUUGCag-UUCCGGGAGGUGU-CCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 41282 | 0.68 | 0.89783 |
Target: 5'- ---gGGCGUCAgguAGGUgCUCCACGGuGAg -3' miRNA: 3'- guagUUGCAGU---UCCGgGAGGUGUC-CU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 63356 | 0.68 | 0.91044 |
Target: 5'- --gUAACuGggcaCAGGGCCCUCCugGGGc -3' miRNA: 3'- guaGUUG-Ca---GUUCCGGGAGGugUCCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 106655 | 0.66 | 0.955236 |
Target: 5'- --cCGGCugGUCAGGGCCgUCCucuccccgggcACGGGAu -3' miRNA: 3'- guaGUUG--CAGUUCCGGgAGG-----------UGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 28426 | 0.67 | 0.946963 |
Target: 5'- --gCGGC-UCcGGGUCaCUCCACGGGAg -3' miRNA: 3'- guaGUUGcAGuUCCGG-GAGGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 14837 | 0.67 | 0.946963 |
Target: 5'- ------gGUCucGGGCCCggggCCGCGGGAg -3' miRNA: 3'- guaguugCAGu-UCCGGGa---GGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 124956 | 0.67 | 0.942471 |
Target: 5'- ---gAGCGUCGAGGUCC-CCAgAGaGAc -3' miRNA: 3'- guagUUGCAGUUCCGGGaGGUgUC-CU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 118071 | 0.67 | 0.942471 |
Target: 5'- --gCGGCGgCucGGCCCUCCGCAuccuGGGc -3' miRNA: 3'- guaGUUGCaGuuCCGGGAGGUGU----CCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 116246 | 0.67 | 0.937739 |
Target: 5'- gGUCuACGaCGGGGcCCCUCCAaugccCGGGGa -3' miRNA: 3'- gUAGuUGCaGUUCC-GGGAGGU-----GUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 22591 | 0.68 | 0.91044 |
Target: 5'- aAUgGACGUCu-GGCUCUCCGCGcuccugcuGGAg -3' miRNA: 3'- gUAgUUGCAGuuCCGGGAGGUGU--------CCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 43504 | 0.66 | 0.964949 |
Target: 5'- --cCGGCGgCGGGGCCCagccccaagacaccUCCACgAGGGg -3' miRNA: 3'- guaGUUGCaGUUCCGGG--------------AGGUG-UCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 46038 | 0.77 | 0.456523 |
Target: 5'- ---aGGCGaCGGGGCCCUCCAgGGGAc -3' miRNA: 3'- guagUUGCaGUUCCGGGAGGUgUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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