miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28920 5' -54.1 NC_006146.1 + 58379 0.68 0.904254
Target:  5'- -uUCGAgGUgAcccAGGCCCUCCACcGGc -3'
miRNA:   3'- guAGUUgCAgU---UCCGGGAGGUGuCCu -5'
28920 5' -54.1 NC_006146.1 + 130805 0.68 0.89783
Target:  5'- gCGUgAGCGagcugCAgcacgcgcugcAGGCCCUCCGcCGGGAg -3'
miRNA:   3'- -GUAgUUGCa----GU-----------UCCGGGAGGU-GUCCU- -5'
28920 5' -54.1 NC_006146.1 + 41282 0.68 0.89783
Target:  5'- ---gGGCGUCAgguAGGUgCUCCACGGuGAg -3'
miRNA:   3'- guagUUGCAGU---UCCGgGAGGUGUC-CU- -5'
28920 5' -54.1 NC_006146.1 + 50269 0.68 0.891171
Target:  5'- uCGUCcuuCGUCGGGGCCaaggggCGCAGGAg -3'
miRNA:   3'- -GUAGuu-GCAGUUCCGGgag---GUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 122656 0.69 0.854493
Target:  5'- --aCGGCGgcgGGGGCCCUCCGCGcGGc -3'
miRNA:   3'- guaGUUGCag-UUCCGGGAGGUGU-CCu -5'
28920 5' -54.1 NC_006146.1 + 137982 0.69 0.852122
Target:  5'- --gCGGCGUCAaaugcuggggugcaAGGCCCUCCAUAc-- -3'
miRNA:   3'- guaGUUGCAGU--------------UCCGGGAGGUGUccu -5'
28920 5' -54.1 NC_006146.1 + 36734 0.7 0.838346
Target:  5'- -cUCGGCGUgcAGGCCCcccucuuaggguUCCGCAGGc -3'
miRNA:   3'- guAGUUGCAguUCCGGG------------AGGUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 140401 0.71 0.794778
Target:  5'- uGUCAGCucuguGUUggGGCCCgUUgGCAGGAa -3'
miRNA:   3'- gUAGUUG-----CAGuuCCGGG-AGgUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 55043 0.71 0.766777
Target:  5'- gGUCGGgGcCGGGGCCUgCCACAGGc -3'
miRNA:   3'- gUAGUUgCaGUUCCGGGaGGUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 96371 0.72 0.737679
Target:  5'- gCAUCuuUGUC-GGGCUCUgCCGCGGGAc -3'
miRNA:   3'- -GUAGuuGCAGuUCCGGGA-GGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 159038 0.73 0.676187
Target:  5'- aGUCAACGUC-GGGCCCgCCccaagcccgagaaGCAGGGc -3'
miRNA:   3'- gUAGUUGCAGuUCCGGGaGG-------------UGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 160732 0.73 0.646344
Target:  5'- --aCAGCGUaUAGGGCCCUgaACAGGAg -3'
miRNA:   3'- guaGUUGCA-GUUCCGGGAggUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 11017 0.75 0.553973
Target:  5'- --cCGGCcUCGAGGCCCUCUGCgAGGAg -3'
miRNA:   3'- guaGUUGcAGUUCCGGGAGGUG-UCCU- -5'
28920 5' -54.1 NC_006146.1 + 46038 0.77 0.456523
Target:  5'- ---aGGCGaCGGGGCCCUCCAgGGGAc -3'
miRNA:   3'- guagUUGCaGUUCCGGGAGGUgUCCU- -5'
28920 5' -54.1 NC_006146.1 + 129618 0.78 0.42016
Target:  5'- cCGUCucCGUCGccGGGUCCUCCGCGGGc -3'
miRNA:   3'- -GUAGuuGCAGU--UCCGGGAGGUGUCCu -5'
28920 5' -54.1 NC_006146.1 + 52957 0.78 0.411347
Target:  5'- cCGUUAcCGuUCAuGGCCCUCCGCGGGGc -3'
miRNA:   3'- -GUAGUuGC-AGUuCCGGGAGGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 61929 0.78 0.394067
Target:  5'- cCAUCAGgGgcucCAGGGCCCuggUCCACGGGAc -3'
miRNA:   3'- -GUAGUUgCa---GUUCCGGG---AGGUGUCCU- -5'
28920 5' -54.1 NC_006146.1 + 10892 1.09 0.004732
Target:  5'- gCAUCAACGUCAAGGCCCUCCACAGGAg -3'
miRNA:   3'- -GUAGUUGCAGUUCCGGGAGGUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.