Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28921 | 3' | -55.5 | NC_006146.1 | + | 19946 | 0.67 | 0.859363 |
Target: 5'- -cGGccuccCUGGGCAGaUCAGGGCCGg -3' miRNA: 3'- cuCCuauuaGACCCGUC-GGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 75076 | 0.67 | 0.859363 |
Target: 5'- cAGGA---UCUGG--AGCCGGGGCCAg -3' miRNA: 3'- cUCCUauuAGACCcgUCGGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 64874 | 0.67 | 0.859363 |
Target: 5'- -cGGA-----UGGGCGGCCAcGGCCAg -3' miRNA: 3'- cuCCUauuagACCCGUCGGUcUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 167385 | 0.67 | 0.851469 |
Target: 5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3' miRNA: 3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 12862 | 0.67 | 0.851469 |
Target: 5'- uGGGGcgAggCUGGGUGGCUGGgcaGGCCGg -3' miRNA: 3'- -CUCCuaUuaGACCCGUCGGUC---UCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 169249 | 0.67 | 0.851469 |
Target: 5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3' miRNA: 3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 55034 | 0.67 | 0.851469 |
Target: 5'- cGGGAUGg---GGGUcggGGCCGGGGCCu -3' miRNA: 3'- cUCCUAUuagaCCCG---UCGGUCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 170180 | 0.67 | 0.851469 |
Target: 5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3' miRNA: 3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 168317 | 0.67 | 0.851469 |
Target: 5'- uGAGGGggcUCccgaGGGCggGGCCGGGGCCu -3' miRNA: 3'- -CUCCUauuAGa---CCCG--UCGGUCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 27617 | 0.68 | 0.843371 |
Target: 5'- -cGGGUccaCUGGGUGGCCAGggaaguuccgGGCCAg -3' miRNA: 3'- cuCCUAuuaGACCCGUCGGUC----------UCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 24196 | 0.68 | 0.838417 |
Target: 5'- aGAGGAggg-CUGGGCcuGcgagguucuguugggGCCGGGGCCGc -3' miRNA: 3'- -CUCCUauuaGACCCG--U---------------CGGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 75113 | 0.68 | 0.835075 |
Target: 5'- cGGGGccaguacagGAUCUGG--AGCCGGGGCCAg -3' miRNA: 3'- -CUCCua-------UUAGACCcgUCGGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 75041 | 0.68 | 0.835075 |
Target: 5'- cGGGGccaguacagGAUCUGG--AGCCGGGGCCAg -3' miRNA: 3'- -CUCCua-------UUAGACCcgUCGGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 126798 | 0.68 | 0.835075 |
Target: 5'- ----------cGGGCAGCCGGGGCCu -3' miRNA: 3'- cuccuauuagaCCCGUCGGUCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 117233 | 0.68 | 0.835075 |
Target: 5'- -cGGGcuucCUGGaaaGCGGCCGGGGCCAg -3' miRNA: 3'- cuCCUauuaGACC---CGUCGGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 157614 | 0.68 | 0.826589 |
Target: 5'- uGGGGGUAGUCgcgggcGGGCAccGCCuGGGUCu -3' miRNA: 3'- -CUCCUAUUAGa-----CCCGU--CGGuCUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 14858 | 0.68 | 0.826589 |
Target: 5'- gGAGGccGAgg-GGGCAGCCAggGAGCUg -3' miRNA: 3'- -CUCCuaUUagaCCCGUCGGU--CUCGGu -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 42379 | 0.68 | 0.809079 |
Target: 5'- cAGGGUGggCgagGGGCGccCCAGGGCCAc -3' miRNA: 3'- cUCCUAUuaGa--CCCGUc-GGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 55649 | 0.68 | 0.80729 |
Target: 5'- cGAGGGgugca---GCAGCCGGAGCCAg -3' miRNA: 3'- -CUCCUauuagaccCGUCGGUCUCGGU- -5' |
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28921 | 3' | -55.5 | NC_006146.1 | + | 150525 | 0.69 | 0.800072 |
Target: 5'- uAGGAUAAaguucuccuUCUGGGCcgcGGCCAGgAGgCAg -3' miRNA: 3'- cUCCUAUU---------AGACCCG---UCGGUC-UCgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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