miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 5' -53.7 NC_006146.1 + 10758 1.09 0.004879
Target:  5'- aUGCGGCUACAUCUACUUCUACCCCCUg -3'
miRNA:   3'- -ACGCCGAUGUAGAUGAAGAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 43394 0.76 0.510342
Target:  5'- aGCGGCUGCcUCUGCcccggCUgcgACCCCCg -3'
miRNA:   3'- aCGCCGAUGuAGAUGaa---GA---UGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 56800 0.75 0.550528
Target:  5'- cGCGGCggcCGUCUggcgggcgggGCUUCUgGCCCCCg -3'
miRNA:   3'- aCGCCGau-GUAGA----------UGAAGA-UGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 32975 0.72 0.705616
Target:  5'- gGCGcGCUGgGUC-GCggCUGCCCCCg -3'
miRNA:   3'- aCGC-CGAUgUAGaUGaaGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 92960 0.72 0.725862
Target:  5'- uUGgGGCUGCuAUCUGC-UCUGCCuguCCCg -3'
miRNA:   3'- -ACgCCGAUG-UAGAUGaAGAUGG---GGGa -5'
28921 5' -53.7 NC_006146.1 + 119550 0.71 0.78428
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCUc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 119610 0.71 0.78428
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCUc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 119640 0.71 0.78428
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCUc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 119580 0.71 0.78428
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCUc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 119520 0.71 0.78428
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCUc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 4555 0.71 0.793576
Target:  5'- aGCGGCUGCGaauucccgcgaaUCUACac--ACCCCCa -3'
miRNA:   3'- aCGCCGAUGU------------AGAUGaagaUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 136806 0.71 0.793576
Target:  5'- gGCGcGCUGgGUC-GCggCUGCCCCCc -3'
miRNA:   3'- aCGC-CGAUgUAGaUGaaGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 101942 0.7 0.811707
Target:  5'- aGCGGC----UCUGCc-CUGCCCCCUg -3'
miRNA:   3'- aCGCCGauguAGAUGaaGAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 68175 0.7 0.845878
Target:  5'- cGCGGC-ACAaCUACUUCUAucaggugcuCCUCCa -3'
miRNA:   3'- aCGCCGaUGUaGAUGAAGAU---------GGGGGa -5'
28921 5' -53.7 NC_006146.1 + 55199 0.7 0.853937
Target:  5'- cGCGGCgggcgaGCGUCUccugucggccGCcUCUGCCUCCg -3'
miRNA:   3'- aCGCCGa-----UGUAGA----------UGaAGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 80756 0.69 0.861788
Target:  5'- -uCGGCUGCcucCUGCUccgCUGCCUCCUg -3'
miRNA:   3'- acGCCGAUGua-GAUGAa--GAUGGGGGA- -5'
28921 5' -53.7 NC_006146.1 + 77650 0.69 0.861788
Target:  5'- aGCGGCUACAUCgugga-UGCCCUa- -3'
miRNA:   3'- aCGCCGAUGUAGaugaagAUGGGGga -5'
28921 5' -53.7 NC_006146.1 + 163191 0.69 0.869425
Target:  5'- aGUGGCUug----GCUUCUGCCCCUc -3'
miRNA:   3'- aCGCCGAuguagaUGAAGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 54965 0.69 0.876841
Target:  5'- cGCcGCcGCcgCUACcgCUGCCCCCg -3'
miRNA:   3'- aCGcCGaUGuaGAUGaaGAUGGGGGa -5'
28921 5' -53.7 NC_006146.1 + 119670 0.69 0.88403
Target:  5'- aGCGGCUACuccaACUccUCaGCCCCCc -3'
miRNA:   3'- aCGCCGAUGuagaUGA--AGaUGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.