Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28921 | 5' | -53.7 | NC_006146.1 | + | 596 | 0.66 | 0.969392 |
Target: 5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3' miRNA: 3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 1527 | 0.66 | 0.969392 |
Target: 5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3' miRNA: 3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 2459 | 0.66 | 0.969392 |
Target: 5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3' miRNA: 3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 3391 | 0.66 | 0.969392 |
Target: 5'- cGCGGCccgGCGcCaGCc-CUGCCCCCUc -3' miRNA: 3'- aCGCCGa--UGUaGaUGaaGAUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 4555 | 0.71 | 0.793576 |
Target: 5'- aGCGGCUGCGaauucccgcgaaUCUACac--ACCCCCa -3' miRNA: 3'- aCGCCGAUGU------------AGAUGaagaUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 10758 | 1.09 | 0.004879 |
Target: 5'- aUGCGGCUACAUCUACUUCUACCCCCUg -3' miRNA: 3'- -ACGCCGAUGUAGAUGAAGAUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 32975 | 0.72 | 0.705616 |
Target: 5'- gGCGcGCUGgGUC-GCggCUGCCCCCg -3' miRNA: 3'- aCGC-CGAUgUAGaUGaaGAUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 43394 | 0.76 | 0.510342 |
Target: 5'- aGCGGCUGCcUCUGCcccggCUgcgACCCCCg -3' miRNA: 3'- aCGCCGAUGuAGAUGaa---GA---UGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 54965 | 0.69 | 0.876841 |
Target: 5'- cGCcGCcGCcgCUACcgCUGCCCCCg -3' miRNA: 3'- aCGcCGaUGuaGAUGaaGAUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 55199 | 0.7 | 0.853937 |
Target: 5'- cGCGGCgggcgaGCGUCUccugucggccGCcUCUGCCUCCg -3' miRNA: 3'- aCGCCGa-----UGUAGA----------UGaAGAUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 55933 | 0.66 | 0.962915 |
Target: 5'- cGCGGCcgugggCUGCUgcgUGCCCCCc -3' miRNA: 3'- aCGCCGaugua-GAUGAag-AUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 56155 | 0.66 | 0.965611 |
Target: 5'- aGCcaaGCUGCAgcagaggauaggCUGCgUUCUGCCCCUg -3' miRNA: 3'- aCGc--CGAUGUa-----------GAUG-AAGAUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 56800 | 0.75 | 0.550528 |
Target: 5'- cGCGGCggcCGUCUggcgggcgggGCUUCUgGCCCCCg -3' miRNA: 3'- aCGCCGau-GUAGA----------UGAAGA-UGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 57565 | 0.67 | 0.937948 |
Target: 5'- cUGgGGCUGaucagcuUCgGCUUCaACCCCCUu -3' miRNA: 3'- -ACgCCGAUgu-----AGaUGAAGaUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 60616 | 0.66 | 0.955539 |
Target: 5'- cUGgGGCUgcggagaguaucACGUCUGCgauggCU-CCCCCg -3' miRNA: 3'- -ACgCCGA------------UGUAGAUGaa---GAuGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 68175 | 0.7 | 0.845878 |
Target: 5'- cGCGGC-ACAaCUACUUCUAucaggugcuCCUCCa -3' miRNA: 3'- aCGCCGaUGUaGAUGAAGAU---------GGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 77650 | 0.69 | 0.861788 |
Target: 5'- aGCGGCUACAUCgugga-UGCCCUa- -3' miRNA: 3'- aCGCCGAUGUAGaugaagAUGGGGga -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 80756 | 0.69 | 0.861788 |
Target: 5'- -uCGGCUGCcucCUGCUccgCUGCCUCCUg -3' miRNA: 3'- acGCCGAUGua-GAUGAa--GAUGGGGGA- -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 85326 | 0.68 | 0.916432 |
Target: 5'- gGCGGCUGCcucCUGCcaccccacgUGCCCCCg -3' miRNA: 3'- aCGCCGAUGua-GAUGaag------AUGGGGGa -5' |
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28921 | 5' | -53.7 | NC_006146.1 | + | 90600 | 0.67 | 0.942709 |
Target: 5'- cGCGGCUGaAUCU--UUCUuGCUCCCUc -3' miRNA: 3'- aCGCCGAUgUAGAugAAGA-UGGGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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