miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 135454 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135175 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 21214 0.66 0.565799
Target:  5'- gGUGGAGCUGGuCAggaaaacgGCCugcaaguucgugcAGGCGcgcuGCCGg -3'
miRNA:   3'- gCGCCUCGACC-GUa-------CGG-------------UCCGC----CGGC- -5'
28922 3' -63.8 NC_006146.1 + 63086 0.66 0.566754
Target:  5'- gGCGGGGCuUGGUAcGCagaAGG-GGCCc -3'
miRNA:   3'- gCGCCUCG-ACCGUaCGg--UCCgCCGGc -5'
28922 3' -63.8 NC_006146.1 + 111904 0.66 0.566754
Target:  5'- gCGCGGGaggcagauGUUGGCcagGUugCAGGUGGCCa -3'
miRNA:   3'- -GCGCCU--------CGACCGua-CG--GUCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 61842 0.66 0.576333
Target:  5'- aGUGGGGCUGGU--GCCGGGacucCCGg -3'
miRNA:   3'- gCGCCUCGACCGuaCGGUCCgcc-GGC- -5'
28922 3' -63.8 NC_006146.1 + 56659 0.66 0.584985
Target:  5'- ---cGAGCUGGCccucccugagGUGCCGGGCccccuggGGCUGg -3'
miRNA:   3'- gcgcCUCGACCG----------UACGGUCCG-------CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 92059 0.66 0.595592
Target:  5'- gGCGGgcccGGCcuggGGCugcUGCUgggGGGCGGCCc -3'
miRNA:   3'- gCGCC----UCGa---CCGu--ACGG---UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 108551 0.66 0.595592
Target:  5'- gCGCGGcGUUGGagugGCUGGGCuuGGCUGg -3'
miRNA:   3'- -GCGCCuCGACCgua-CGGUCCG--CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 139122 0.66 0.595592
Target:  5'- -cCGGAGCUGGCuccgaugGCgCAGGUGGg-- -3'
miRNA:   3'- gcGCCUCGACCGua-----CG-GUCCGCCggc -5'
28922 3' -63.8 NC_006146.1 + 123015 0.66 0.547725
Target:  5'- -uCGGAGCU-GCugaccgagGCCgAGGCGGCCc -3'
miRNA:   3'- gcGCCUCGAcCGua------CGG-UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 100006 0.66 0.547725
Target:  5'- uCG-GGAGCgGGCAcGUCgggAGGCGGCgGg -3'
miRNA:   3'- -GCgCCUCGaCCGUaCGG---UCCGCCGgC- -5'
28922 3' -63.8 NC_006146.1 + 154671 0.66 0.566754
Target:  5'- cCGUGGuGGCggggGGCGcugcUGCUGGGUGGUCu -3'
miRNA:   3'- -GCGCC-UCGa---CCGU----ACGGUCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 136662 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136197 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136940 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136754 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 137126 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136383 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 61208 0.66 0.547725
Target:  5'- gGCGGAGCUcugccccgaucgGGUAccggacUGCgAGGUGGUCu -3'
miRNA:   3'- gCGCCUCGA------------CCGU------ACGgUCCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.