Results 1 - 20 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28922 | 3' | -63.8 | NC_006146.1 | + | 51895 | 0.65 | 0.602359 |
Target: 5'- gGUGGAgGCUgcgucGGCGgggGCCuccgaggcaccgacGGGCGGCCc -3' miRNA: 3'- gCGCCU-CGA-----CCGUa--CGG--------------UCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 39792 | 0.66 | 0.599458 |
Target: 5'- -cCGGAGCUcccggcuucugggacGGCGgccguugacgGCCcGGCGGCCu -3' miRNA: 3'- gcGCCUCGA---------------CCGUa---------CGGuCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 49549 | 0.66 | 0.556265 |
Target: 5'- gGCGGAgGCcacGCcgGCCAGGCccagcauGGCCu -3' miRNA: 3'- gCGCCU-CGac-CGuaCGGUCCG-------CCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 135268 | 0.66 | 0.576333 |
Target: 5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3' miRNA: 3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 39548 | 0.66 | 0.557217 |
Target: 5'- aGUGGAGCUGG-AUGUCAa-UGGCCa -3' miRNA: 3'- gCGCCUCGACCgUACGGUccGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 137845 | 0.66 | 0.557217 |
Target: 5'- aGgGGGGCUcggggugggugGGCGUGucCCGGGCcccgccccgGGCCGg -3' miRNA: 3'- gCgCCUCGA-----------CCGUAC--GGUCCG---------CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 154671 | 0.66 | 0.566754 |
Target: 5'- cCGUGGuGGCggggGGCGcugcUGCUGGGUGGUCu -3' miRNA: 3'- -GCGCC-UCGa---CCGU----ACGGUCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 135175 | 0.66 | 0.576333 |
Target: 5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3' miRNA: 3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 67211 | 0.66 | 0.561026 |
Target: 5'- cCGUGGccGGUcgccUGGCcgGCCAGGCacaggaagccacggaGGCUGg -3' miRNA: 3'- -GCGCC--UCG----ACCGuaCGGUCCG---------------CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 61208 | 0.66 | 0.547725 |
Target: 5'- gGCGGAGCUcugccccgaucgGGUAccggacUGCgAGGUGGUCu -3' miRNA: 3'- gCGCCUCGA------------CCGU------ACGgUCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 100006 | 0.66 | 0.547725 |
Target: 5'- uCG-GGAGCgGGCAcGUCgggAGGCGGCgGg -3' miRNA: 3'- -GCgCCUCGaCCGUaCGG---UCCGCCGgC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 123015 | 0.66 | 0.547725 |
Target: 5'- -uCGGAGCU-GCugaccgagGCCgAGGCGGCCc -3' miRNA: 3'- gcGCCUCGAcCGua------CGG-UCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 139122 | 0.66 | 0.595592 |
Target: 5'- -cCGGAGCUGGCuccgaugGCgCAGGUGGg-- -3' miRNA: 3'- gcGCCUCGACCGua-----CG-GUCCGCCggc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 108551 | 0.66 | 0.595592 |
Target: 5'- gCGCGGcGUUGGagugGCUGGGCuuGGCUGg -3' miRNA: 3'- -GCGCCuCGACCgua-CGGUCCG--CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 92059 | 0.66 | 0.595592 |
Target: 5'- gGCGGgcccGGCcuggGGCugcUGCUgggGGGCGGCCc -3' miRNA: 3'- gCGCC----UCGa---CCGu--ACGG---UCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 56659 | 0.66 | 0.584985 |
Target: 5'- ---cGAGCUGGCccucccugagGUGCCGGGCccccuggGGCUGg -3' miRNA: 3'- gcgcCUCGACCG----------UACGGUCCG-------CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 61842 | 0.66 | 0.576333 |
Target: 5'- aGUGGGGCUGGU--GCCGGGacucCCGg -3' miRNA: 3'- gCGCCUCGACCGuaCGGUCCgcc-GGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 111904 | 0.66 | 0.566754 |
Target: 5'- gCGCGGGaggcagauGUUGGCcagGUugCAGGUGGCCa -3' miRNA: 3'- -GCGCCU--------CGACCGua-CG--GUCCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 63086 | 0.66 | 0.566754 |
Target: 5'- gGCGGGGCuUGGUAcGCagaAGG-GGCCc -3' miRNA: 3'- gCGCCUCG-ACCGUaCGg--UCCgCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 21214 | 0.66 | 0.565799 |
Target: 5'- gGUGGAGCUGGuCAggaaaacgGCCugcaaguucgugcAGGCGcgcuGCCGg -3' miRNA: 3'- gCGCCUCGACC-GUa-------CGG-------------UCCGC----CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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