miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 10284 1.09 0.000657
Target:  5'- aCGCGGAGCUGGCAUGCCAGGCGGCCGa -3'
miRNA:   3'- -GCGCCUCGACCGUACGGUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 45568 0.77 0.11768
Target:  5'- cCGCgaGGAGCUcGcGCA-GCCAGGCGGCCu -3'
miRNA:   3'- -GCG--CCUCGA-C-CGUaCGGUCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 167639 0.77 0.123644
Target:  5'- cCGCGGGGCccgGcGCGUGCCGGG-GGCCc -3'
miRNA:   3'- -GCGCCUCGa--C-CGUACGGUCCgCCGGc -5'
28922 3' -63.8 NC_006146.1 + 151560 0.77 0.126731
Target:  5'- gCGCccGGAGCgaggccgGGCAgGCCGGGCaGGCCGg -3'
miRNA:   3'- -GCG--CCUCGa------CCGUaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 148482 0.77 0.126731
Target:  5'- gCGCccGGAGCgaggccgGGCAgGCCGGGCaGGCCGg -3'
miRNA:   3'- -GCG--CCUCGa------CCGUaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 154638 0.77 0.126731
Target:  5'- gCGCccGGAGCgaggccgGGCAgGCCGGGCaGGCCGg -3'
miRNA:   3'- -GCG--CCUCGa------CCGUaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 142326 0.77 0.126731
Target:  5'- gCGCccGGAGCgaggccgGGCAgGCCGGGCaGGCCGg -3'
miRNA:   3'- -GCG--CCUCGa------CCGUaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 157715 0.77 0.126731
Target:  5'- gCGCccGGAGCgaggccgGGCAgGCCGGGCaGGCCGg -3'
miRNA:   3'- -GCG--CCUCGa------CCGUaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 145404 0.77 0.126731
Target:  5'- gCGCccGGAGCgaggccgGGCAgGCCGGGCaGGCCGg -3'
miRNA:   3'- -GCG--CCUCGa------CCGUaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 55043 0.76 0.154096
Target:  5'- gGuCGGGGCcggGGCcUGCCacAGGCGGCCGu -3'
miRNA:   3'- gC-GCCUCGa--CCGuACGG--UCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 153611 0.75 0.178026
Target:  5'- gGCGGcugggggucgGGCUGGCcUGCCAGGgGGCa- -3'
miRNA:   3'- gCGCC----------UCGACCGuACGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 141299 0.75 0.178026
Target:  5'- gGCGGcugggggucgGGCUGGCcUGCCAGGgGGCa- -3'
miRNA:   3'- gCGCC----------UCGACCGuACGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 144377 0.75 0.178026
Target:  5'- gGCGGcugggggucgGGCUGGCcUGCCAGGgGGCa- -3'
miRNA:   3'- gCGCC----------UCGACCGuACGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 147455 0.75 0.178026
Target:  5'- gGCGGcugggggucgGGCUGGCcUGCCAGGgGGCa- -3'
miRNA:   3'- gCGCC----------UCGACCGuACGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 156688 0.75 0.178026
Target:  5'- gGCGGcugggggucgGGCUGGCcUGCCAGGgGGCa- -3'
miRNA:   3'- gCGCC----------UCGACCGuACGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 150533 0.75 0.178026
Target:  5'- gGCGGcugggggucgGGCUGGCcUGCCAGGgGGCa- -3'
miRNA:   3'- gCGCC----------UCGACCGuACGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 98299 0.75 0.182322
Target:  5'- gGUGGGGCUgagGGCGUGCUccGUGGCCGu -3'
miRNA:   3'- gCGCCUCGA---CCGUACGGucCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 14161 0.74 0.195764
Target:  5'- cCGUGGAGCUGaGCGUcugcGCCAGGCuGGaCCc -3'
miRNA:   3'- -GCGCCUCGAC-CGUA----CGGUCCG-CC-GGc -5'
28922 3' -63.8 NC_006146.1 + 102391 0.73 0.215028
Target:  5'- uCGgGGAGCUGGUGguaucUGUCccugGGGCGGCCa -3'
miRNA:   3'- -GCgCCUCGACCGU-----ACGG----UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 33094 0.73 0.220091
Target:  5'- uGCGGcuCUggGGCA-GCCGGGUGGCCGc -3'
miRNA:   3'- gCGCCucGA--CCGUaCGGUCCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.