miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 2476 0.66 0.595592
Target:  5'- gGCGGuguGGCcGGCGggGgCAGGCagcuGGCCGa -3'
miRNA:   3'- gCGCC---UCGaCCGUa-CgGUCCG----CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 2843 0.72 0.276469
Target:  5'- aCGCcaGGAGC-GGgGUGCCGGuuGUGGCCGg -3'
miRNA:   3'- -GCG--CCUCGaCCgUACGGUC--CGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 5064 0.72 0.282072
Target:  5'- uGCGGGGCUGGCcguUGgaggcguCCAcGCGGCCa -3'
miRNA:   3'- gCGCCUCGACCGu--AC-------GGUcCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 10284 1.09 0.000657
Target:  5'- aCGCGGAGCUGGCAUGCCAGGCGGCCGa -3'
miRNA:   3'- -GCGCCUCGACCGUACGGUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 12865 0.7 0.366177
Target:  5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3'
miRNA:   3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 14161 0.74 0.195764
Target:  5'- cCGUGGAGCUGaGCGUcugcGCCAGGCuGGaCCc -3'
miRNA:   3'- -GCGCCUCGAC-CGUA----CGGUCCG-CC-GGc -5'
28922 3' -63.8 NC_006146.1 + 14771 0.72 0.270347
Target:  5'- gGCGGGGCUcgGGCAccUGUU-GGCGGCUGa -3'
miRNA:   3'- gCGCCUCGA--CCGU--ACGGuCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 15943 0.7 0.366177
Target:  5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3'
miRNA:   3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 19020 0.7 0.366177
Target:  5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3'
miRNA:   3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 21214 0.66 0.565799
Target:  5'- gGUGGAGCUGGuCAggaaaacgGCCugcaaguucgugcAGGCGcgcuGCCGg -3'
miRNA:   3'- gCGCCUCGACC-GUa-------CGG-------------UCCGC----CGGC- -5'
28922 3' -63.8 NC_006146.1 + 21278 0.7 0.366177
Target:  5'- -cUGGuGCUGGCGgacGCCcggguaaaggAGGCGGCCa -3'
miRNA:   3'- gcGCCuCGACCGUa--CGG----------UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 21642 0.68 0.439076
Target:  5'- aCGCGGAGCggcacGGCAUuCCc-GUGGCCa -3'
miRNA:   3'- -GCGCCUCGa----CCGUAcGGucCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 22098 0.7 0.366177
Target:  5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3'
miRNA:   3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 25176 0.7 0.366177
Target:  5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3'
miRNA:   3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 27347 0.67 0.510323
Target:  5'- aGCGGguGGCgcGGCAagGCCGGGgGGCg- -3'
miRNA:   3'- gCGCC--UCGa-CCGUa-CGGUCCgCCGgc -5'
28922 3' -63.8 NC_006146.1 + 28254 0.7 0.366177
Target:  5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3'
miRNA:   3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 30211 0.68 0.465158
Target:  5'- --aGGGccGCUGcGCccGCCGGGCuGGCCGg -3'
miRNA:   3'- gcgCCU--CGAC-CGuaCGGUCCG-CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 33094 0.73 0.220091
Target:  5'- uGCGGcuCUggGGCA-GCCGGGUGGCCGc -3'
miRNA:   3'- gCGCCucGA--CCGUaCGGUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 33217 0.7 0.336565
Target:  5'- -cUGGuGCUccggGGCA-GCCGGGUGGCCGc -3'
miRNA:   3'- gcGCCuCGA----CCGUaCGGUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 33338 0.71 0.322427
Target:  5'- cCG-GGuGCUccggGGCA-GCCGGGUGGCCGc -3'
miRNA:   3'- -GCgCCuCGA----CCGUaCGGUCCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.