miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 45568 0.77 0.11768
Target:  5'- cCGCgaGGAGCUcGcGCA-GCCAGGCGGCCu -3'
miRNA:   3'- -GCG--CCUCGA-C-CGUaCGGUCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 56818 0.71 0.295496
Target:  5'- gGCGGGGCUucuggcccccgaGGCG-GCCucuGGCGGCgGg -3'
miRNA:   3'- gCGCCUCGA------------CCGUaCGGu--CCGCCGgC- -5'
28922 3' -63.8 NC_006146.1 + 167401 0.71 0.314842
Target:  5'- gGCGGGGCcggggccUGGCGgggGCCAGcGCGGggucCCGg -3'
miRNA:   3'- gCGCCUCG-------ACCGUa--CGGUC-CGCC----GGC- -5'
28922 3' -63.8 NC_006146.1 + 51895 0.65 0.602359
Target:  5'- gGUGGAgGCUgcgucGGCGgggGCCuccgaggcaccgacGGGCGGCCc -3'
miRNA:   3'- gCGCCU-CGA-----CCGUa--CGG--------------UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 33094 0.73 0.220091
Target:  5'- uGCGGcuCUggGGCA-GCCGGGUGGCCGc -3'
miRNA:   3'- gCGCCucGA--CCGUaCGGUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 60082 0.73 0.220091
Target:  5'- cCGUGGAGCUacgGGCAaucGCCGGGcCGGuuGg -3'
miRNA:   3'- -GCGCCUCGA---CCGUa--CGGUCC-GCCggC- -5'
28922 3' -63.8 NC_006146.1 + 44714 0.73 0.246951
Target:  5'- cCGUGGcccccGCUGGCcgGCCugaugcGGUGGCCGc -3'
miRNA:   3'- -GCGCCu----CGACCGuaCGGu-----CCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 46108 0.72 0.252638
Target:  5'- uCGCGcGAGCagcagcaGGCAUGcCCGGGCccuGGCCGu -3'
miRNA:   3'- -GCGC-CUCGa------CCGUAC-GGUCCG---CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 5064 0.72 0.282072
Target:  5'- uGCGGGGCUGGCcguUGgaggcguCCAcGCGGCCa -3'
miRNA:   3'- gCGCCUCGACCGu--AC-------GGUcCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 90151 0.71 0.295496
Target:  5'- aGCGGAGCaggaGGCA-GCCgAGGUagaGGCCGc -3'
miRNA:   3'- gCGCCUCGa---CCGUaCGG-UCCG---CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 168571 0.71 0.289042
Target:  5'- cCGCGGGGCccgGcGCGUGCCGGG-GGacCCGg -3'
miRNA:   3'- -GCGCCUCGa--C-CGUACGGUCCgCC--GGC- -5'
28922 3' -63.8 NC_006146.1 + 2843 0.72 0.276469
Target:  5'- aCGCcaGGAGC-GGgGUGCCGGuuGUGGCCGg -3'
miRNA:   3'- -GCG--CCUCGaCCgUACGGUC--CGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 167639 0.77 0.123644
Target:  5'- cCGCGGGGCccgGcGCGUGCCGGG-GGCCc -3'
miRNA:   3'- -GCGCCUCGa--C-CGUACGGUCCgCCGGc -5'
28922 3' -63.8 NC_006146.1 + 169503 0.71 0.289042
Target:  5'- cCGCGGGGCccgGcGCGUGCCGGG-GGacCCGg -3'
miRNA:   3'- -GCGCCUCGa--C-CGUACGGUCCgCC--GGC- -5'
28922 3' -63.8 NC_006146.1 + 55043 0.76 0.154096
Target:  5'- gGuCGGGGCcggGGCcUGCCacAGGCGGCCGu -3'
miRNA:   3'- gC-GCCUCGa--CCGuACGG--UCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 46780 0.72 0.258433
Target:  5'- gGCGGAugGCUGGCcgGCCGGcGCgagggcaaaGGCCu -3'
miRNA:   3'- gCGCCU--CGACCGuaCGGUC-CG---------CCGGc -5'
28922 3' -63.8 NC_006146.1 + 170434 0.71 0.289042
Target:  5'- cCGCGGGGCccgGcGCGUGCCGGG-GGacCCGg -3'
miRNA:   3'- -GCGCCUCGa--C-CGUACGGUCCgCC--GGC- -5'
28922 3' -63.8 NC_006146.1 + 90229 0.71 0.295496
Target:  5'- gGUGGAGgaGGCA-GCCgaGGGagaGGCCGa -3'
miRNA:   3'- gCGCCUCgaCCGUaCGG--UCCg--CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 98299 0.75 0.182322
Target:  5'- gGUGGGGCUgagGGCGUGCUccGUGGCCGu -3'
miRNA:   3'- gCGCCUCGA---CCGUACGGucCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 68738 0.73 0.24137
Target:  5'- uCGCGGGG-UGGUGgagGcCCAGGUGGCCa -3'
miRNA:   3'- -GCGCCUCgACCGUa--C-GGUCCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.