miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 39548 0.66 0.557217
Target:  5'- aGUGGAGCUGG-AUGUCAa-UGGCCa -3'
miRNA:   3'- gCGCCUCGACCgUACGGUccGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 39792 0.66 0.599458
Target:  5'- -cCGGAGCUcccggcuucugggacGGCGgccguugacgGCCcGGCGGCCu -3'
miRNA:   3'- gcGCCUCGA---------------CCGUa---------CGGuCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 40286 0.72 0.258433
Target:  5'- gGCGGAgGCgGGCcaaagagGCCGGGCaGGCCa -3'
miRNA:   3'- gCGCCU-CGaCCGua-----CGGUCCG-CCGGc -5'
28922 3' -63.8 NC_006146.1 + 40569 0.69 0.417162
Target:  5'- uGCGGGGgacgcugaugaggucCUGGCc--CUGGGCGGCCGa -3'
miRNA:   3'- gCGCCUC---------------GACCGuacGGUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 41609 0.68 0.439076
Target:  5'- cCGgGGGGCUGGUccGCUGGGCccgGGCg- -3'
miRNA:   3'- -GCgCCUCGACCGuaCGGUCCG---CCGgc -5'
28922 3' -63.8 NC_006146.1 + 42259 0.7 0.35115
Target:  5'- gCGCgaGGAGCUGGCucaGCUGGGCGacaCCGg -3'
miRNA:   3'- -GCG--CCUCGACCGua-CGGUCCGCc--GGC- -5'
28922 3' -63.8 NC_006146.1 + 42719 0.66 0.576333
Target:  5'- cCGCucGGGCUGGCAgccgcggauCCGGGCGGUg- -3'
miRNA:   3'- -GCGc-CUCGACCGUac-------GGUCCGCCGgc -5'
28922 3' -63.8 NC_006146.1 + 42977 0.68 0.456373
Target:  5'- gCGCGGAGUuugugGGCAgcaGCCcGGCGcCCGc -3'
miRNA:   3'- -GCGCCUCGa----CCGUa--CGGuCCGCcGGC- -5'
28922 3' -63.8 NC_006146.1 + 43465 0.7 0.336565
Target:  5'- -cUGGAGC-GGCA-GCCuccucGGCGGCCGu -3'
miRNA:   3'- gcGCCUCGaCCGUaCGGu----CCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 43588 0.73 0.24137
Target:  5'- cCGgGGAGCggGGCGggagGCCGGGUcgGGUCGg -3'
miRNA:   3'- -GCgCCUCGa-CCGUa---CGGUCCG--CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 44218 0.66 0.548672
Target:  5'- gGCGGuGCcuUGGUgaccgucuccucugGCCGGGCGGCgGu -3'
miRNA:   3'- gCGCCuCG--ACCGua------------CGGUCCGCCGgC- -5'
28922 3' -63.8 NC_006146.1 + 44319 0.7 0.373856
Target:  5'- gGCuGGGGCcgUGGCAgccgggggcuucUGCaCAGGUGGCUGa -3'
miRNA:   3'- gCG-CCUCG--ACCGU------------ACG-GUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 44714 0.73 0.246951
Target:  5'- cCGUGGcccccGCUGGCcgGCCugaugcGGUGGCCGc -3'
miRNA:   3'- -GCGCCu----CGACCGuaCGGu-----CCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 45568 0.77 0.11768
Target:  5'- cCGCgaGGAGCUcGcGCA-GCCAGGCGGCCu -3'
miRNA:   3'- -GCG--CCUCGA-C-CGUaCGGUCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 46108 0.72 0.252638
Target:  5'- uCGCGcGAGCagcagcaGGCAUGcCCGGGCccuGGCCGu -3'
miRNA:   3'- -GCGC-CUCGa------CCGUAC-GGUCCG---CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 46780 0.72 0.258433
Target:  5'- gGCGGAugGCUGGCcgGCCGGcGCgagggcaaaGGCCu -3'
miRNA:   3'- gCGCCU--CGACCGuaCGGUC-CG---------CCGGc -5'
28922 3' -63.8 NC_006146.1 + 48021 0.7 0.343802
Target:  5'- gGCGGGGgaGGCAcGgCGGGCcGGCuCGg -3'
miRNA:   3'- gCGCCUCgaCCGUaCgGUCCG-CCG-GC- -5'
28922 3' -63.8 NC_006146.1 + 48318 0.7 0.343802
Target:  5'- cCGuCGGAgguGCUGGCGgugguggGCCAGGCguccagucuGGCCa -3'
miRNA:   3'- -GC-GCCU---CGACCGUa------CGGUCCG---------CCGGc -5'
28922 3' -63.8 NC_006146.1 + 49549 0.66 0.556265
Target:  5'- gGCGGAgGCcacGCcgGCCAGGCccagcauGGCCu -3'
miRNA:   3'- gCGCCU-CGac-CGuaCGGUCCG-------CCGGc -5'
28922 3' -63.8 NC_006146.1 + 50276 0.67 0.51958
Target:  5'- uCGuCGGGGCcaaggGGCGcaggagaucUGUCAGGCGccGCCGg -3'
miRNA:   3'- -GC-GCCUCGa----CCGU---------ACGGUCCGC--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.