Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28922 | 3' | -63.8 | NC_006146.1 | + | 170196 | 0.71 | 0.314842 |
Target: 5'- gGCGGGGCcggggccUGGCGgggGCCAGcGCGGggucCCGg -3' miRNA: 3'- gCGCCUCG-------ACCGUa--CGGUC-CGCC----GGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 167401 | 0.71 | 0.314842 |
Target: 5'- gGCGGGGCcggggccUGGCGgggGCCAGcGCGGggucCCGg -3' miRNA: 3'- gCGCCUCG-------ACCGUa--CGGUC-CGCC----GGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 2843 | 0.72 | 0.276469 |
Target: 5'- aCGCcaGGAGC-GGgGUGCCGGuuGUGGCCGg -3' miRNA: 3'- -GCG--CCUCGaCCgUACGGUC--CGCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 98299 | 0.75 | 0.182322 |
Target: 5'- gGUGGGGCUgagGGCGUGCUccGUGGCCGu -3' miRNA: 3'- gCGCCUCGA---CCGUACGGucCGCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 25176 | 0.7 | 0.366177 |
Target: 5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3' miRNA: 3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 48318 | 0.7 | 0.343802 |
Target: 5'- cCGuCGGAgguGCUGGCGgugguggGCCAGGCguccagucuGGCCa -3' miRNA: 3'- -GC-GCCU---CGACCGUa------CGGUCCG---------CCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 56818 | 0.71 | 0.295496 |
Target: 5'- gGCGGGGCUucuggcccccgaGGCG-GCCucuGGCGGCgGg -3' miRNA: 3'- gCGCCUCGA------------CCGUaCGGu--CCGCCGgC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 55043 | 0.76 | 0.154096 |
Target: 5'- gGuCGGGGCcggGGCcUGCCacAGGCGGCCGu -3' miRNA: 3'- gC-GCCUCGa--CCGuACGG--UCCGCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 48021 | 0.7 | 0.343802 |
Target: 5'- gGCGGGGgaGGCAcGgCGGGCcGGCuCGg -3' miRNA: 3'- gCGCCUCgaCCGUaCgGUCCG-CCG-GC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 167639 | 0.77 | 0.123644 |
Target: 5'- cCGCGGGGCccgGcGCGUGCCGGG-GGCCc -3' miRNA: 3'- -GCGCCUCGa--C-CGUACGGUCCgCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 90229 | 0.71 | 0.295496 |
Target: 5'- gGUGGAGgaGGCA-GCCgaGGGagaGGCCGa -3' miRNA: 3'- gCGCCUCgaCCGUaCGG--UCCg--CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 33338 | 0.71 | 0.322427 |
Target: 5'- cCG-GGuGCUccggGGCA-GCCGGGUGGCCGc -3' miRNA: 3'- -GCgCCuCGA----CCGUaCGGUCCGCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 169503 | 0.71 | 0.289042 |
Target: 5'- cCGCGGGGCccgGcGCGUGCCGGG-GGacCCGg -3' miRNA: 3'- -GCGCCUCGa--C-CGUACGGUCCgCC--GGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 5064 | 0.72 | 0.282072 |
Target: 5'- uGCGGGGCUGGCcguUGgaggcguCCAcGCGGCCa -3' miRNA: 3'- gCGCCUCGACCGu--AC-------GGUcCGCCGGc -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 44714 | 0.73 | 0.246951 |
Target: 5'- cCGUGGcccccGCUGGCcgGCCugaugcGGUGGCCGc -3' miRNA: 3'- -GCGCCu----CGACCGuaCGGu-----CCGCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 33094 | 0.73 | 0.220091 |
Target: 5'- uGCGGcuCUggGGCA-GCCGGGUGGCCGc -3' miRNA: 3'- gCGCCucGA--CCGUaCGGUCCGCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 169147 | 0.7 | 0.366177 |
Target: 5'- gCGUGGGGaUGGCcgGCgGGaGgGGCCGg -3' miRNA: 3'- -GCGCCUCgACCGuaCGgUC-CgCCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 28254 | 0.7 | 0.366177 |
Target: 5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3' miRNA: 3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 15943 | 0.7 | 0.366177 |
Target: 5'- gGCGaGGCUGGgugGCUGGGCaGGCCGg -3' miRNA: 3'- gCGCcUCGACCguaCGGUCCG-CCGGC- -5' |
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28922 | 3' | -63.8 | NC_006146.1 | + | 148525 | 0.7 | 0.358609 |
Target: 5'- gGUGGAgagcaugcuGCUGGCcacUGCCAugauggguGGUGGCCGg -3' miRNA: 3'- gCGCCU---------CGACCGu--ACGGU--------CCGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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