Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28922 | 5' | -53.8 | NC_006146.1 | + | 3548 | 0.72 | 0.673027 |
Target: 5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3' miRNA: 3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 138330 | 0.71 | 0.754895 |
Target: 5'- uGCAAGCugGCGggaAUAUGCAGCcCAc -3' miRNA: 3'- cCGUUCGugCGUg--UGUACGUCGaGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 114411 | 0.69 | 0.846327 |
Target: 5'- cGGCccgacuGCGCGCGCugAUGCcGCUgGa -3' miRNA: 3'- -CCGuu----CGUGCGUGugUACGuCGAgUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 3096 | 0.66 | 0.952191 |
Target: 5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3' miRNA: 3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 2164 | 0.66 | 0.952191 |
Target: 5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3' miRNA: 3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 1232 | 0.66 | 0.952191 |
Target: 5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3' miRNA: 3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 23482 | 0.66 | 0.948341 |
Target: 5'- uGGcCAGGUACGgGCugGUG-GGCUCGc -3' miRNA: 3'- -CC-GUUCGUGCgUGugUACgUCGAGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 103630 | 0.66 | 0.943829 |
Target: 5'- cGCAAGCugGCACGCGgaggaGgGGCcCGc -3' miRNA: 3'- cCGUUCGugCGUGUGUa----CgUCGaGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 14048 | 0.66 | 0.939066 |
Target: 5'- gGGCAGGCGCaaGCGCcgGCuGGCUgCGg -3' miRNA: 3'- -CCGUUCGUGcgUGUGuaCG-UCGA-GUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 117998 | 0.67 | 0.928784 |
Target: 5'- cGGgGGGcCACGCAgAcCAUGCggGGCUCGg -3' miRNA: 3'- -CCgUUC-GUGCGUgU-GUACG--UCGAGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 110065 | 0.67 | 0.928784 |
Target: 5'- aGGgAAGCA-GCGCGgGUgugcaGCAGCUCGUc -3' miRNA: 3'- -CCgUUCGUgCGUGUgUA-----CGUCGAGUA- -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 10044 | 0.67 | 0.923263 |
Target: 5'- aGGUGAGCugGCcagacggaAC-CAUGCAGC-CAg -3' miRNA: 3'- -CCGUUCGugCG--------UGuGUACGUCGaGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 20211 | 0.67 | 0.917488 |
Target: 5'- aGGCuGGGCAUGUACuGCGUGCAGgaUUCGg -3' miRNA: 3'- -CCG-UUCGUGCGUG-UGUACGUC--GAGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 95243 | 0.67 | 0.915705 |
Target: 5'- aGCGAGaCACGCACGCAcgguccuuggccucUGCAaGCUa-- -3' miRNA: 3'- cCGUUC-GUGCGUGUGU--------------ACGU-CGAgua -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 21249 | 0.67 | 0.911459 |
Target: 5'- uGCAGGCGCGC-UGCcgGCGcguGCUCGa -3' miRNA: 3'- cCGUUCGUGCGuGUGuaCGU---CGAGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 128282 | 0.68 | 0.90518 |
Target: 5'- uGGCGuGGCACGUcaGCACGUGCuuCUCc- -3' miRNA: 3'- -CCGU-UCGUGCG--UGUGUACGucGAGua -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 49935 | 0.68 | 0.90518 |
Target: 5'- uGGCccagcAGCGCGCACuCGUGaCGGUUCu- -3' miRNA: 3'- -CCGu----UCGUGCGUGuGUAC-GUCGAGua -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 169704 | 0.68 | 0.901293 |
Target: 5'- aGGCGAGCAauaaaagggacagaGCAUACA-GCAGC-CAc -3' miRNA: 3'- -CCGUUCGUg-------------CGUGUGUaCGUCGaGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 40082 | 0.68 | 0.891877 |
Target: 5'- cGGCGgagGGCcUGCAgCGCGugcUGCAGCUCGc -3' miRNA: 3'- -CCGU---UCGuGCGU-GUGU---ACGUCGAGUa -5' |
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28922 | 5' | -53.8 | NC_006146.1 | + | 162417 | 0.69 | 0.854475 |
Target: 5'- uGGUggGCACGgGCuagGgGUGuCAGCUCAc -3' miRNA: 3'- -CCGuuCGUGCgUG---UgUAC-GUCGAGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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