miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 5' -53.8 NC_006146.1 + 126473 0.73 0.640417
Target:  5'- aGGUAAGCGCGCGCACcuucgGUGUuacuccaAGCUCc- -3'
miRNA:   3'- -CCGUUCGUGCGUGUG-----UACG-------UCGAGua -5'
28922 5' -53.8 NC_006146.1 + 82349 0.66 0.943828
Target:  5'- gGGUuacgGAGCAC-CACGgAUGCAGC-CAUc -3'
miRNA:   3'- -CCG----UUCGUGcGUGUgUACGUCGaGUA- -5'
28922 5' -53.8 NC_006146.1 + 152416 0.67 0.911459
Target:  5'- uGGCccauGGCAUGUugACGaGCgAGCUCGUc -3'
miRNA:   3'- -CCGu---UCGUGCGugUGUaCG-UCGAGUA- -5'
28922 5' -53.8 NC_006146.1 + 9892 0.68 0.90518
Target:  5'- aGGUAcGCAUGCACACGgcaUGgGGCUgAg -3'
miRNA:   3'- -CCGUuCGUGCGUGUGU---ACgUCGAgUa -5'
28922 5' -53.8 NC_006146.1 + 37204 0.68 0.884861
Target:  5'- gGGCAauGGCugGCcCACGUGaauGCUCu- -3'
miRNA:   3'- -CCGU--UCGugCGuGUGUACgu-CGAGua -5'
28922 5' -53.8 NC_006146.1 + 2238 0.69 0.862408
Target:  5'- gGGCAcaaAGUACGUguuGCGCGUGgAGCUUg- -3'
miRNA:   3'- -CCGU---UCGUGCG---UGUGUACgUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 62617 0.66 0.956629
Target:  5'- uGGCAGacGCACGUAUACAgGCugGGCUUu- -3'
miRNA:   3'- -CCGUU--CGUGCGUGUGUaCG--UCGAGua -5'
28922 5' -53.8 NC_006146.1 + 124540 0.66 0.939066
Target:  5'- aGCAGGCACaaaACGCAgaGCAGCuUCAUc -3'
miRNA:   3'- cCGUUCGUGcg-UGUGUa-CGUCG-AGUA- -5'
28922 5' -53.8 NC_006146.1 + 54782 0.68 0.897985
Target:  5'- gGGCcgccaggGAGCGCGCcUugG-GCAGCUCGUu -3'
miRNA:   3'- -CCG-------UUCGUGCGuGugUaCGUCGAGUA- -5'
28922 5' -53.8 NC_006146.1 + 149648 0.69 0.846327
Target:  5'- aGGuCGAGCACGCGC-CG-GCAGCg--- -3'
miRNA:   3'- -CC-GUUCGUGCGUGuGUaCGUCGagua -5'
28922 5' -53.8 NC_006146.1 + 68175 0.7 0.783975
Target:  5'- gGGCAGGCGCaGCgucaggacgcggGCGCA-GCGGCUCc- -3'
miRNA:   3'- -CCGUUCGUG-CG------------UGUGUaCGUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 86260 0.69 0.829421
Target:  5'- aGCAGGCACGUGgGCAgcacgGC-GCUCAc -3'
miRNA:   3'- cCGUUCGUGCGUgUGUa----CGuCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 158066 0.67 0.925502
Target:  5'- gGGCAcagcaucagcaccuuGGaCAUGCGCACcgGCAGC-CGc -3'
miRNA:   3'- -CCGU---------------UC-GUGCGUGUGuaCGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 50427 0.66 0.948341
Target:  5'- cGGCAGGCAgGC-CGCAagcuucGCGGC-CAg -3'
miRNA:   3'- -CCGUUCGUgCGuGUGUa-----CGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 21249 0.67 0.911459
Target:  5'- uGCAGGCGCGC-UGCcgGCGcguGCUCGa -3'
miRNA:   3'- cCGUUCGUGCGuGUGuaCGU---CGAGUa -5'
28922 5' -53.8 NC_006146.1 + 95243 0.67 0.915705
Target:  5'- aGCGAGaCACGCACGCAcgguccuuggccucUGCAaGCUa-- -3'
miRNA:   3'- cCGUUC-GUGCGUGUGU--------------ACGU-CGAgua -5'
28922 5' -53.8 NC_006146.1 + 20211 0.67 0.917488
Target:  5'- aGGCuGGGCAUGUACuGCGUGCAGgaUUCGg -3'
miRNA:   3'- -CCG-UUCGUGCGUG-UGUACGUC--GAGUa -5'
28922 5' -53.8 NC_006146.1 + 10044 0.67 0.923263
Target:  5'- aGGUGAGCugGCcagacggaAC-CAUGCAGC-CAg -3'
miRNA:   3'- -CCGUUCGugCG--------UGuGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 3096 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 23482 0.66 0.948341
Target:  5'- uGGcCAGGUACGgGCugGUG-GGCUCGc -3'
miRNA:   3'- -CC-GUUCGUGCgUGugUACgUCGAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.