miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 5' -53.8 NC_006146.1 + 753 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 1232 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 1684 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 2164 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 2238 0.69 0.862408
Target:  5'- gGGCAcaaAGUACGUguuGCGCGUGgAGCUUg- -3'
miRNA:   3'- -CCGU---UCGUGCG---UGUGUACgUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 2616 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 3096 0.66 0.952191
Target:  5'- gGGCGGGcCACGCGCGCccGCcacgcccAGCUg-- -3'
miRNA:   3'- -CCGUUC-GUGCGUGUGuaCG-------UCGAgua -5'
28922 5' -53.8 NC_006146.1 + 3548 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 9892 0.68 0.90518
Target:  5'- aGGUAcGCAUGCACACGgcaUGgGGCUgAg -3'
miRNA:   3'- -CCGUuCGUGCGUGUGU---ACgUCGAgUa -5'
28922 5' -53.8 NC_006146.1 + 10044 0.67 0.923263
Target:  5'- aGGUGAGCugGCcagacggaAC-CAUGCAGC-CAg -3'
miRNA:   3'- -CCGUUCGugCG--------UGuGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 10318 1.07 0.005086
Target:  5'- gGGCAAGCACGCACACAUGCAGCUCAUc -3'
miRNA:   3'- -CCGUUCGUGCGUGUGUACGUCGAGUA- -5'
28922 5' -53.8 NC_006146.1 + 14048 0.66 0.939066
Target:  5'- gGGCAGGCGCaaGCGCcgGCuGGCUgCGg -3'
miRNA:   3'- -CCGUUCGUGcgUGUGuaCG-UCGA-GUa -5'
28922 5' -53.8 NC_006146.1 + 20211 0.67 0.917488
Target:  5'- aGGCuGGGCAUGUACuGCGUGCAGgaUUCGg -3'
miRNA:   3'- -CCG-UUCGUGCGUG-UGUACGUC--GAGUa -5'
28922 5' -53.8 NC_006146.1 + 21249 0.67 0.911459
Target:  5'- uGCAGGCGCGC-UGCcgGCGcguGCUCGa -3'
miRNA:   3'- cCGUUCGUGCGuGUGuaCGU---CGAGUa -5'
28922 5' -53.8 NC_006146.1 + 23482 0.66 0.948341
Target:  5'- uGGcCAGGUACGgGCugGUG-GGCUCGc -3'
miRNA:   3'- -CC-GUUCGUGCgUGugUACgUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 37204 0.68 0.884861
Target:  5'- gGGCAauGGCugGCcCACGUGaauGCUCu- -3'
miRNA:   3'- -CCGU--UCGugCGuGUGUACgu-CGAGua -5'
28922 5' -53.8 NC_006146.1 + 40082 0.68 0.891877
Target:  5'- cGGCGgagGGCcUGCAgCGCGugcUGCAGCUCGc -3'
miRNA:   3'- -CCGU---UCGuGCGU-GUGU---ACGUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 49935 0.68 0.90518
Target:  5'- uGGCccagcAGCGCGCACuCGUGaCGGUUCu- -3'
miRNA:   3'- -CCGu----UCGUGCGUGuGUAC-GUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 50427 0.66 0.948341
Target:  5'- cGGCAGGCAgGC-CGCAagcuucGCGGC-CAg -3'
miRNA:   3'- -CCGUUCGUgCGuGUGUa-----CGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 54782 0.68 0.897985
Target:  5'- gGGCcgccaggGAGCGCGCcUugG-GCAGCUCGUu -3'
miRNA:   3'- -CCG-------UUCGUGCGuGugUaCGUCGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.