miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 2130 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 3062 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 44821 0.66 0.620417
Target:  5'- aCCuCUGUagGGGGcCGGCgCCCCUcGUGCc -3'
miRNA:   3'- gGGuGGCA--CCCU-GCCG-GGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 137797 0.66 0.620417
Target:  5'- aCCCGCCG----GCGGCCaCCCGGcUGCc -3'
miRNA:   3'- -GGGUGGCacccUGCCGGgGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 137674 0.66 0.620417
Target:  5'- aCCCGCCG-GcGGccaccCGGCUgCCCCGGaGCa -3'
miRNA:   3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 8706 0.66 0.620417
Target:  5'- gCCACCuGUGGGGCGGaguuugcaCCCCAa--- -3'
miRNA:   3'- gGGUGG-CACCCUGCCgg------GGGGUcacg -5'
28925 3' -63.4 NC_006146.1 + 56639 0.66 0.619462
Target:  5'- uCCUAUC-UGGGGCaccacuacgagcuGGCCCUCCcugaGGUGCc -3'
miRNA:   3'- -GGGUGGcACCCUG-------------CCGGGGGG----UCACG- -5'
28925 3' -63.4 NC_006146.1 + 64379 0.67 0.614692
Target:  5'- gCCCACCaG-GGGAUGcGCCCaCCUGucugacuuggcccccGUGCa -3'
miRNA:   3'- -GGGUGG-CaCCCUGC-CGGG-GGGU---------------CACG- -5'
28925 3' -63.4 NC_006146.1 + 42638 0.67 0.610878
Target:  5'- gCCGCCGUGGgccucacguaGugGGCCCagaGGUaGCg -3'
miRNA:   3'- gGGUGGCACC----------CugCCGGGgggUCA-CG- -5'
28925 3' -63.4 NC_006146.1 + 167075 0.67 0.602304
Target:  5'- aCCCGCCGgcuccaaaaaagugaGGGGggcgUGGCcauCCCCCGcGUGCc -3'
miRNA:   3'- -GGGUGGCa--------------CCCU----GCCG---GGGGGU-CACG- -5'
28925 3' -63.4 NC_006146.1 + 115195 0.67 0.601352
Target:  5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3'
miRNA:   3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 83665 0.67 0.601352
Target:  5'- cUCCACCuuUGGGuuGGCCaCCCAGgugaugGCu -3'
miRNA:   3'- -GGGUGGc-ACCCugCCGGgGGGUCa-----CG- -5'
28925 3' -63.4 NC_006146.1 + 69802 0.67 0.591847
Target:  5'- gCCCA-CGUGGGACgugaugGGCCgCgaAGUGCu -3'
miRNA:   3'- -GGGUgGCACCCUG------CCGGgGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 52244 0.67 0.591847
Target:  5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3'
miRNA:   3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 56804 0.67 0.591847
Target:  5'- gCgGCCGUcuggcgggcGGGGCuucuGGCCCCCgAG-GCg -3'
miRNA:   3'- gGgUGGCA---------CCCUG----CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 13381 0.67 0.590898
Target:  5'- aCCACCGUGGucugcGCGGCCacggacugCCUCAGccaggucUGCa -3'
miRNA:   3'- gGGUGGCACCc----UGCCGG--------GGGGUC-------ACG- -5'
28925 3' -63.4 NC_006146.1 + 29234 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 23078 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 26156 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 20000 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.