miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 13381 0.67 0.590898
Target:  5'- aCCACCGUGGucugcGCGGCCacggacugCCUCAGccaggucUGCa -3'
miRNA:   3'- gGGUGGCACCc----UGCCGG--------GGGGUC-------ACG- -5'
28925 3' -63.4 NC_006146.1 + 13845 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 15777 0.66 0.658587
Target:  5'- -aCGCCGcgGGGACcuuGCCCCaCCAGaagGUg -3'
miRNA:   3'- ggGUGGCa-CCCUGc--CGGGG-GGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 16923 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 17140 0.69 0.446537
Target:  5'- aUgACgGUGGGcAUGGCCCUCCcuggagccuucaAGUGCa -3'
miRNA:   3'- gGgUGgCACCC-UGCCGGGGGG------------UCACG- -5'
28925 3' -63.4 NC_006146.1 + 20000 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 21691 0.68 0.544812
Target:  5'- aCUGCUGcagGGGGCGGCCaacauCCUgCAGUGCc -3'
miRNA:   3'- gGGUGGCa--CCCUGCCGG-----GGG-GUCACG- -5'
28925 3' -63.4 NC_006146.1 + 23078 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 24039 0.66 0.629963
Target:  5'- cCCC-CUGgcgGGGugacGCGGCCCCgagCCAG-GCc -3'
miRNA:   3'- -GGGuGGCa--CCC----UGCCGGGG---GGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 26156 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 29234 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 31424 0.67 0.581421
Target:  5'- cCCCggguGCCGUGGaGACcuucuccagugcaGGCaccCCCCCGG-GCa -3'
miRNA:   3'- -GGG----UGGCACC-CUG-------------CCG---GGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 31755 0.67 0.563506
Target:  5'- cCCCcCCGgGGGACGGgagCCCCCGuucgGCc -3'
miRNA:   3'- -GGGuGGCaCCCUGCCg--GGGGGUca--CG- -5'
28925 3' -63.4 NC_006146.1 + 32927 0.66 0.658587
Target:  5'- cCCCGCCGgcccccGGGAggccCGGCCgcgauccuCCCCcGUGa -3'
miRNA:   3'- -GGGUGGCa-----CCCU----GCCGG--------GGGGuCACg -5'
28925 3' -63.4 NC_006146.1 + 33185 0.66 0.649055
Target:  5'- gCCGCCGcucGGuccugGGCCUCCgGGUGCu -3'
miRNA:   3'- gGGUGGCac-CCug---CCGGGGGgUCACG- -5'
28925 3' -63.4 NC_006146.1 + 33372 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 33390 0.7 0.397247
Target:  5'- cCCCGCUccggGUGGGGggUGGCCCgCCUGG-GCa -3'
miRNA:   3'- -GGGUGG----CACCCU--GCCGGG-GGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 33465 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 33558 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 33651 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.