miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 267 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 684 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 1198 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 1615 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 2130 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 2547 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 3062 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 3479 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 3747 0.72 0.316486
Target:  5'- gCCCuucagcCCG-GGGugGGUCCCCUAGaccUGCc -3'
miRNA:   3'- -GGGu-----GGCaCCCugCCGGGGGGUC---ACG- -5'
28925 3' -63.4 NC_006146.1 + 5086 0.69 0.463711
Target:  5'- gUCCACgCGgccaGGGACGcCCCCCUAGccgGCc -3'
miRNA:   3'- -GGGUG-GCa---CCCUGCcGGGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 8589 0.66 0.656682
Target:  5'- aCCC-CCGgguaugugagcgGGucagaaagacucGACGGCCCCUgGGUGUc -3'
miRNA:   3'- -GGGuGGCa-----------CC------------CUGCCGGGGGgUCACG- -5'
28925 3' -63.4 NC_006146.1 + 8706 0.66 0.620417
Target:  5'- gCCACCuGUGGGGCGGaguuugcaCCCCAa--- -3'
miRNA:   3'- gGGUGG-CACCCUGCCgg------GGGGUcacg -5'
28925 3' -63.4 NC_006146.1 + 8778 1.12 0.000521
Target:  5'- uCCCACCGUGGGACGGCCCCCCAGUGCa -3'
miRNA:   3'- -GGGUGGCACCCUGCCGGGGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 8855 0.68 0.544812
Target:  5'- cCCCGCgGUGGaacCGGuUUCCCaCAGUGCc -3'
miRNA:   3'- -GGGUGgCACCcu-GCC-GGGGG-GUCACG- -5'
28925 3' -63.4 NC_006146.1 + 8887 0.78 0.135529
Target:  5'- cUCCACCGUGGaGcCGGUCUCCCAggGUGCc -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU--CACG- -5'
28925 3' -63.4 NC_006146.1 + 8919 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 8985 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 9052 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 9119 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 12763 0.67 0.581421
Target:  5'- gCCCACCuGUGaccugccggaccuGGacGCGGCCCUgCAGggGCg -3'
miRNA:   3'- -GGGUGG-CAC-------------CC--UGCCGGGGgGUCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.