miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 110409 0.75 0.217102
Target:  5'- cCUCGCCGUcggGGGAgcUGGCCCCCCGGc-- -3'
miRNA:   3'- -GGGUGGCA---CCCU--GCCGGGGGGUCacg -5'
28925 3' -63.4 NC_006146.1 + 42419 0.7 0.413289
Target:  5'- gCCCGCCGUGGGcccccUGGCCUacaAGUGUu -3'
miRNA:   3'- -GGGUGGCACCCu----GCCGGGgggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 130468 0.69 0.45508
Target:  5'- aCCCGCCuacGGGGCcgcuGCCgCCCCGGgugGCu -3'
miRNA:   3'- -GGGUGGca-CCCUGc---CGG-GGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 169993 0.66 0.6681
Target:  5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3'
miRNA:   3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5'
28925 3' -63.4 NC_006146.1 + 3747 0.72 0.316486
Target:  5'- gCCCuucagcCCG-GGGugGGUCCCCUAGaccUGCc -3'
miRNA:   3'- -GGGu-----GGCaCCCugCCGGGGGGUC---ACG- -5'
28925 3' -63.4 NC_006146.1 + 128052 0.72 0.323291
Target:  5'- aCCUGCgCGUGGGccugGCGGCCCUCgAG-GCc -3'
miRNA:   3'- -GGGUG-GCACCC----UGCCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 142993 0.71 0.358939
Target:  5'- gCCCuugGCCGUGGGAgcagcuccCGGUCCCCUccgcuugcGUGCc -3'
miRNA:   3'- -GGG---UGGCACCCU--------GCCGGGGGGu-------CACG- -5'
28925 3' -63.4 NC_006146.1 + 54986 0.71 0.358939
Target:  5'- cCCCGuacCCG-GGGugGccggaaGCCCCCCGG-GCg -3'
miRNA:   3'- -GGGU---GGCaCCCugC------CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 161778 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 54131 0.7 0.413289
Target:  5'- gCagguCCGUGGaGuaguaGCGGCCCCCC-GUGCc -3'
miRNA:   3'- gGgu--GGCACC-C-----UGCCGGGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 161912 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 99030 0.71 0.366391
Target:  5'- aCgGCCGUGuagaGGCCCCCCAGgGCc -3'
miRNA:   3'- gGgUGGCACccugCCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 45017 0.73 0.258943
Target:  5'- cCCCACCGUcccucgagagugaGGGAgagaggccggggcCGGCUCCCUAGggGCg -3'
miRNA:   3'- -GGGUGGCA-------------CCCU-------------GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 161979 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 42677 0.73 0.277319
Target:  5'- gCCCGCgGUGGGcugccugaggcugGCaGaGCCCCCCAGcGCc -3'
miRNA:   3'- -GGGUGgCACCC-------------UG-C-CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 57281 0.71 0.366391
Target:  5'- -gCACCGUcaagcuGACGGUCCCCCAGgagGCc -3'
miRNA:   3'- ggGUGGCAcc----CUGCCGGGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 33390 0.7 0.397247
Target:  5'- cCCCGCUccggGUGGGGggUGGCCCgCCUGG-GCa -3'
miRNA:   3'- -GGGUGG----CACCCU--GCCGGG-GGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 36150 0.7 0.437244
Target:  5'- uCCCACUcUGGGACgagcguuGGCCUggcuggCCUGGUGCa -3'
miRNA:   3'- -GGGUGGcACCCUG-------CCGGG------GGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 59155 0.73 0.296721
Target:  5'- gCCCGCCucaGGGAC-GCCaCCCAGUGUg -3'
miRNA:   3'- -GGGUGGca-CCCUGcCGGgGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 51926 0.71 0.344356
Target:  5'- -gCACCGacGGGCGGCCCC--GGUGCg -3'
miRNA:   3'- ggGUGGCacCCUGCCGGGGggUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.