miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 8778 1.12 0.000521
Target:  5'- uCCCACCGUGGGACGGCCCCCCAGUGCa -3'
miRNA:   3'- -GGGUGGCACCCUGCCGGGGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 8887 0.78 0.135529
Target:  5'- cUCCACCGUGGaGcCGGUCUCCCAggGUGCc -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU--CACG- -5'
28925 3' -63.4 NC_006146.1 + 110409 0.75 0.217102
Target:  5'- cCUCGCCGUcggGGGAgcUGGCCCCCCGGc-- -3'
miRNA:   3'- -GGGUGGCA---CCCU--GCCGGGGGGUCacg -5'
28925 3' -63.4 NC_006146.1 + 40978 0.74 0.232466
Target:  5'- aCCGCCGUGGuGccgcgcCGGCgCCCCAGgGCg -3'
miRNA:   3'- gGGUGGCACC-Cu-----GCCGgGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 9052 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 9119 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 8985 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 8919 0.74 0.243211
Target:  5'- aUCCACCGUGGaGcCGGUCUCCCAcGggGCg -3'
miRNA:   3'- -GGGUGGCACC-CuGCCGGGGGGU-Ca-CG- -5'
28925 3' -63.4 NC_006146.1 + 67927 0.74 0.256646
Target:  5'- gCCCACCGUGgaguaugucccggauGGGCGGCugCCCUCGGaggGCg -3'
miRNA:   3'- -GGGUGGCAC---------------CCUGCCG--GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 45017 0.73 0.258943
Target:  5'- cCCCACCGUcccucgagagugaGGGAgagaggccggggcCGGCUCCCUAGggGCg -3'
miRNA:   3'- -GGGUGGCA-------------CCCU-------------GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 114649 0.73 0.260098
Target:  5'- cCCCGCCGa-GGACGGCCCCgCCuccGCc -3'
miRNA:   3'- -GGGUGGCacCCUGCCGGGG-GGucaCG- -5'
28925 3' -63.4 NC_006146.1 + 42677 0.73 0.277319
Target:  5'- gCCCGCgGUGGGcugccugaggcugGCaGaGCCCCCCAGcGCc -3'
miRNA:   3'- -GGGUGgCACCC-------------UG-C-CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 59155 0.73 0.296721
Target:  5'- gCCCGCCucaGGGAC-GCCaCCCAGUGUg -3'
miRNA:   3'- -GGGUGGca-CCCUGcCGGgGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 3747 0.72 0.316486
Target:  5'- gCCCuucagcCCG-GGGugGGUCCCCUAGaccUGCc -3'
miRNA:   3'- -GGGu-----GGCaCCCugCCGGGGGGUC---ACG- -5'
28925 3' -63.4 NC_006146.1 + 128052 0.72 0.323291
Target:  5'- aCCUGCgCGUGGGccugGCGGCCCUCgAG-GCc -3'
miRNA:   3'- -GGGUG-GCACCC----UGCCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 125098 0.71 0.344356
Target:  5'- gCgGCCGUGGcGGCGGCCUUCCucgGCc -3'
miRNA:   3'- gGgUGGCACC-CUGCCGGGGGGucaCG- -5'
28925 3' -63.4 NC_006146.1 + 51926 0.71 0.344356
Target:  5'- -gCACCGacGGGCGGCCCC--GGUGCg -3'
miRNA:   3'- ggGUGGCacCCUGCCGGGGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 115903 0.71 0.344356
Target:  5'- uCCCGCCcggGGGGCuuccGGCCaCCCCGGguacggggGCa -3'
miRNA:   3'- -GGGUGGca-CCCUG----CCGG-GGGGUCa-------CG- -5'
28925 3' -63.4 NC_006146.1 + 54986 0.71 0.358939
Target:  5'- cCCCGuacCCG-GGGugGccggaaGCCCCCCGG-GCg -3'
miRNA:   3'- -GGGU---GGCaCCCugC------CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 142993 0.71 0.358939
Target:  5'- gCCCuugGCCGUGGGAgcagcuccCGGUCCCCUccgcuugcGUGCc -3'
miRNA:   3'- -GGG---UGGCACCCU--------GCCGGGGGGu-------CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.