miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 5' -51 NC_006146.1 + 3677 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 7935 0.7 0.952607
Target:  5'- --cCCG-GGAAAGGGGCgcCCGCCAa -3'
miRNA:   3'- guuGGCgCCUUUUUCUGaaGGCGGUg -5'
28925 5' -51 NC_006146.1 + 8813 1.11 0.007168
Target:  5'- cCAACCGCGGAAAAAGACUUCCGCCACg -3'
miRNA:   3'- -GUUGGCGCCUUUUUCUGAAGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 14814 0.66 0.993018
Target:  5'- cCGGCCGggcCGGAGGAGGGCacggUCUcgggcccgggGCCGCg -3'
miRNA:   3'- -GUUGGC---GCCUUUUUCUGa---AGG----------CGGUG- -5'
28925 5' -51 NC_006146.1 + 15717 0.66 0.991967
Target:  5'- uGGCCGaGGAGAgGGGGCUguuuccUCCGCCcaGCa -3'
miRNA:   3'- gUUGGCgCCUUU-UUCUGA------AGGCGG--UG- -5'
28925 5' -51 NC_006146.1 + 19720 0.68 0.973261
Target:  5'- ---aCGgGGGAGGAGGCcggCCGCUACc -3'
miRNA:   3'- guugGCgCCUUUUUCUGaa-GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 24607 0.68 0.973261
Target:  5'- cCAGCUaacgaGCGGAGAGcuccACUggggCCGCCACg -3'
miRNA:   3'- -GUUGG-----CGCCUUUUuc--UGAa---GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 24671 0.67 0.990793
Target:  5'- --cCCGUGGAAGA--ACUgcagccauggCCGCCGCu -3'
miRNA:   3'- guuGGCGCCUUUUucUGAa---------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 25357 0.69 0.96186
Target:  5'- --uCC-CGGGAAAGGugUguccggucaacgccgUCCGCCGCg -3'
miRNA:   3'- guuGGcGCCUUUUUCugA---------------AGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 34218 0.69 0.963961
Target:  5'- -cGCCGCccgcuucauGGggGGGGAgg-CCGCCGCa -3'
miRNA:   3'- guUGGCG---------CCuuUUUCUgaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 36089 0.66 0.993957
Target:  5'- aCAACCGCaaGGAGAcuagaaggGGGAC--CCGCUGCu -3'
miRNA:   3'- -GUUGGCG--CCUUU--------UUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 38537 0.68 0.982781
Target:  5'- aGGCCGUGGAGAcgcAGGACc-CCGuCCAg -3'
miRNA:   3'- gUUGGCGCCUUU---UUCUGaaGGC-GGUg -5'
28925 5' -51 NC_006146.1 + 39966 0.71 0.911459
Target:  5'- aCGGCUGgGGAagGAGAGGCUgaggCUGCUGCg -3'
miRNA:   3'- -GUUGGCgCCU--UUUUCUGAa---GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 40363 0.67 0.989489
Target:  5'- -uGCgGCGGAGAAGGccccCUggUCGCCGCc -3'
miRNA:   3'- guUGgCGCCUUUUUCu---GAa-GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 41031 0.69 0.956629
Target:  5'- gAGCCGUGGGAGGAGggccuaggacaGCUUCCGagggcUCGCu -3'
miRNA:   3'- gUUGGCGCCUUUUUC-----------UGAAGGC-----GGUG- -5'
28925 5' -51 NC_006146.1 + 42731 0.81 0.448395
Target:  5'- gCAGCCGCGGAuccGGGCggugCUGCCGCa -3'
miRNA:   3'- -GUUGGCGCCUuuuUCUGaa--GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 44324 0.69 0.963961
Target:  5'- gGGCCGUGGcAGccGGGGGCUUCUGCaCAg -3'
miRNA:   3'- gUUGGCGCC-UU--UUUCUGAAGGCG-GUg -5'
28925 5' -51 NC_006146.1 + 45798 0.76 0.673027
Target:  5'- gGACgGCcGAGGAAGGCcgCCGCCACg -3'
miRNA:   3'- gUUGgCGcCUUUUUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 48245 0.69 0.956629
Target:  5'- -cGCCGCGcGGA--GGGCccCCGCCGCc -3'
miRNA:   3'- guUGGCGC-CUUuuUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 49976 0.74 0.774413
Target:  5'- --cCCGCGGuuuuGGACcggCCGCCACa -3'
miRNA:   3'- guuGGCGCCuuuuUCUGaa-GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.