miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 5' -51 NC_006146.1 + 53 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 117 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 149 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 881 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 1016 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1048 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1080 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1224 0.67 0.990793
Target:  5'- aGACC-CGGggGcGGGCcacgcgcgcCCGCCACg -3'
miRNA:   3'- gUUGGcGCCuuUuUCUGaa-------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 1813 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 1917 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1949 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2012 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2156 0.67 0.990793
Target:  5'- aGACC-CGGggGcGGGCcacgcgcgcCCGCCACg -3'
miRNA:   3'- gUUGGcGCCuuUuUCUGaa-------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 2425 0.69 0.956629
Target:  5'- cCGACCGUGGAcguGAGGCcggaUCUGCgCACc -3'
miRNA:   3'- -GUUGGCGCCUuu-UUCUGa---AGGCG-GUG- -5'
28925 5' -51 NC_006146.1 + 2745 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 2849 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2881 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2913 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2945 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 3088 0.67 0.990793
Target:  5'- aGACC-CGGggGcGGGCcacgcgcgcCCGCCACg -3'
miRNA:   3'- gUUGGcGCCuuUuUCUGaa-------GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.