Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 5' | -51 | NC_006146.1 | + | 115699 | 0.66 | 0.99553 |
Target: 5'- gCGGCCGacaGGAGAc--GCUcgcCCGCCGCg -3' miRNA: 3'- -GUUGGCg--CCUUUuucUGAa--GGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 15717 | 0.66 | 0.991967 |
Target: 5'- uGGCCGaGGAGAgGGGGCUguuuccUCCGCCcaGCa -3' miRNA: 3'- gUUGGCgCCUUU-UUCUGA------AGGCGG--UG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 99329 | 0.66 | 0.991967 |
Target: 5'- -uGCUGCGGAAGccgcucuGGCUgUCUGUCGCa -3' miRNA: 3'- guUGGCGCCUUUuu-----CUGA-AGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 110568 | 0.66 | 0.99553 |
Target: 5'- -cACCGCaGAGu-AGACacUCGCCACg -3' miRNA: 3'- guUGGCGcCUUuuUCUGaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 129868 | 0.66 | 0.993018 |
Target: 5'- -cGCCGCGGAcggggGGGAGAUgcccuucUUCGaCCACg -3' miRNA: 3'- guUGGCGCCU-----UUUUCUGa------AGGC-GGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 55424 | 0.66 | 0.993018 |
Target: 5'- -cGCCGCGGccucguuGAGAC--CCGCCGa -3' miRNA: 3'- guUGGCGCCuuu----UUCUGaaGGCGGUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 104388 | 0.66 | 0.993957 |
Target: 5'- gCggUCGUGGAGGGAGGCcgugccaaaaUCCGUCAg -3' miRNA: 3'- -GuuGGCGCCUUUUUCUGa---------AGGCGGUg -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 159233 | 0.66 | 0.994303 |
Target: 5'- -uACCGUGGggGGccAGGCUggcaUuauaucggugcaacgCCGCCACg -3' miRNA: 3'- guUGGCGCCuuUU--UCUGA----A---------------GGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 55177 | 0.66 | 0.994791 |
Target: 5'- uGACCGCGuccc-AGGCUgcggCCGCgGCg -3' miRNA: 3'- gUUGGCGCcuuuuUCUGAa---GGCGgUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 14814 | 0.66 | 0.993018 |
Target: 5'- cCGGCCGggcCGGAGGAGGGCacggUCUcgggcccgggGCCGCg -3' miRNA: 3'- -GUUGGC---GCCUUUUUCUGa---AGG----------CGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 117695 | 0.66 | 0.993018 |
Target: 5'- --cCCGCGGAGuuuGGCa--CGCCGCc -3' miRNA: 3'- guuGGCGCCUUuuuCUGaagGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 127387 | 0.66 | 0.993957 |
Target: 5'- --cUCGUGGAGGugucuuGGGGCUgggccCCGCCGCc -3' miRNA: 3'- guuGGCGCCUUU------UUCUGAa----GGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 107483 | 0.66 | 0.99553 |
Target: 5'- uGGCCGCGcu--GAGGg--CCGCCACu -3' miRNA: 3'- gUUGGCGCcuuuUUCUgaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 2945 | 0.66 | 0.994791 |
Target: 5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3' miRNA: 3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 2913 | 0.66 | 0.994791 |
Target: 5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3' miRNA: 3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 2012 | 0.66 | 0.994791 |
Target: 5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3' miRNA: 3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 1080 | 0.66 | 0.994791 |
Target: 5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3' miRNA: 3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 1048 | 0.66 | 0.994791 |
Target: 5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3' miRNA: 3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 36089 | 0.66 | 0.993957 |
Target: 5'- aCAACCGCaaGGAGAcuagaaggGGGAC--CCGCUGCu -3' miRNA: 3'- -GUUGGCG--CCUUU--------UUCUGaaGGCGGUG- -5' |
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28925 | 5' | -51 | NC_006146.1 | + | 169791 | 0.66 | 0.993957 |
Target: 5'- uGACUGUGGAAGAaacaaauaguuAGGCUUCUGUa-- -3' miRNA: 3'- gUUGGCGCCUUUU-----------UCUGAAGGCGgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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