miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 5' -51 NC_006146.1 + 8813 1.11 0.007168
Target:  5'- cCAACCGCGGAAAAAGACUUCCGCCACg -3'
miRNA:   3'- -GUUGGCGCCUUUUUCUGAAGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 42731 0.81 0.448395
Target:  5'- gCAGCCGCGGAuccGGGCggugCUGCCGCa -3'
miRNA:   3'- -GUUGGCGCCUuuuUCUGaa--GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 45798 0.76 0.673027
Target:  5'- gGACgGCcGAGGAAGGCcgCCGCCACg -3'
miRNA:   3'- gUUGgCGcCUUUUUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 49976 0.74 0.774413
Target:  5'- --cCCGCGGuuuuGGACcggCCGCCACa -3'
miRNA:   3'- guuGGCGCCuuuuUCUGaa-GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 102593 0.74 0.774413
Target:  5'- --cUCGCGGcccgAGGAGGGCUUCCGCCu- -3'
miRNA:   3'- guuGGCGCC----UUUUUCUGAAGGCGGug -5'
28925 5' -51 NC_006146.1 + 1813 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 2745 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 3677 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 881 0.74 0.793391
Target:  5'- uGGCCGCGGGAgcagacggggGAAGGCcgCgCGCCGCc -3'
miRNA:   3'- gUUGGCGCCUU----------UUUCUGaaG-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 139060 0.74 0.793391
Target:  5'- gGACCcagaggGCGGAAGcuGGACUUUgGCCACg -3'
miRNA:   3'- gUUGG------CGCCUUUu-UCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 121205 0.74 0.811752
Target:  5'- uGGCCccuggagaggGUGGAGGAGGACgacgCCGCCAUa -3'
miRNA:   3'- gUUGG----------CGCCUUUUUCUGaa--GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 70869 0.73 0.820677
Target:  5'- aCGACCGCGaGAAGccgcGGACc-CCGCCGCc -3'
miRNA:   3'- -GUUGGCGC-CUUUu---UCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 73996 0.73 0.846327
Target:  5'- uCGAUCGCGGAGGAGGuGCUgcCCGUCAg -3'
miRNA:   3'- -GUUGGCGCCUUUUUC-UGAa-GGCGGUg -5'
28925 5' -51 NC_006146.1 + 149594 0.73 0.846327
Target:  5'- gGGCgGCGGGAGagGAGGCUggCCGCCu- -3'
miRNA:   3'- gUUGgCGCCUUU--UUCUGAa-GGCGGug -5'
28925 5' -51 NC_006146.1 + 62020 0.73 0.854474
Target:  5'- uGGCCGCGGcgcucGGCcUCUGCCGCa -3'
miRNA:   3'- gUUGGCGCCuuuuuCUGaAGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 71699 0.72 0.862408
Target:  5'- aGGCCGCGGccucccuGGAGGCggaCGCCACc -3'
miRNA:   3'- gUUGGCGCCuu-----UUUCUGaagGCGGUG- -5'
28925 5' -51 NC_006146.1 + 120829 0.72 0.877607
Target:  5'- -cGCCGUGGAcgaAGAGGACgUCCGCUu- -3'
miRNA:   3'- guUGGCGCCU---UUUUCUGaAGGCGGug -5'
28925 5' -51 NC_006146.1 + 114756 0.72 0.88271
Target:  5'- aCGGCCGCGGGGAGggcucucggucucgGGGCccgCgGCCACc -3'
miRNA:   3'- -GUUGGCGCCUUUU--------------UCUGaa-GgCGGUG- -5'
28925 5' -51 NC_006146.1 + 55477 0.72 0.884861
Target:  5'- uGGCCGCGGGcgaGAacGAGGCccggCCGCCAg -3'
miRNA:   3'- gUUGGCGCCU---UU--UUCUGaa--GGCGGUg -5'
28925 5' -51 NC_006146.1 + 126801 0.71 0.898651
Target:  5'- gCAGCCGgGGccuGGAGGUUUCCGCgGCg -3'
miRNA:   3'- -GUUGGCgCCuu-UUUCUGAAGGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.