miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 5' -51 NC_006146.1 + 42731 0.81 0.448395
Target:  5'- gCAGCCGCGGAuccGGGCggugCUGCCGCa -3'
miRNA:   3'- -GUUGGCGCCUuuuUCUGaa--GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 34218 0.69 0.963961
Target:  5'- -cGCCGCccgcuucauGGggGGGGAgg-CCGCCGCa -3'
miRNA:   3'- guUGGCG---------CCuuUUUCUgaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 128236 0.69 0.963961
Target:  5'- ---gCGCGGGGAGcu-CUUCCGCUACc -3'
miRNA:   3'- guugGCGCCUUUUucuGAAGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 110568 0.66 0.99553
Target:  5'- -cACCGCaGAGu-AGACacUCGCCACg -3'
miRNA:   3'- guUGGCGcCUUuuUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 70869 0.73 0.820677
Target:  5'- aCGACCGCGaGAAGccgcGGACc-CCGCCGCc -3'
miRNA:   3'- -GUUGGCGC-CUUUu---UCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 149594 0.73 0.846327
Target:  5'- gGGCgGCGGGAGagGAGGCUggCCGCCu- -3'
miRNA:   3'- gUUGgCGCCUUU--UUCUGAa-GGCGGug -5'
28925 5' -51 NC_006146.1 + 55477 0.72 0.884861
Target:  5'- uGGCCGCGGGcgaGAacGAGGCccggCCGCCAg -3'
miRNA:   3'- gUUGGCGCCU---UU--UUCUGaa--GGCGGUg -5'
28925 5' -51 NC_006146.1 + 126801 0.71 0.898651
Target:  5'- gCAGCCGgGGccuGGAGGUUUCCGCgGCg -3'
miRNA:   3'- -GUUGGCgCCuu-UUUCUGAAGGCGgUG- -5'
28925 5' -51 NC_006146.1 + 54952 0.7 0.928784
Target:  5'- --cCCGCGGGGc--GACcgCCGCCGCc -3'
miRNA:   3'- guuGGCGCCUUuuuCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 2425 0.69 0.956629
Target:  5'- cCGACCGUGGAcguGAGGCcggaUCUGCgCACc -3'
miRNA:   3'- -GUUGGCGCCUuu-UUCUGa---AGGCG-GUG- -5'
28925 5' -51 NC_006146.1 + 90573 0.7 0.952607
Target:  5'- aGACC-CGGGAGAAGGCcccagUCGCCAa -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGaa---GGCGGUg -5'
28925 5' -51 NC_006146.1 + 134096 0.71 0.917487
Target:  5'- cCAGCCGUGGAAAAuguGAgcUUUCUGCCc- -3'
miRNA:   3'- -GUUGGCGCCUUUUu--CU--GAAGGCGGug -5'
28925 5' -51 NC_006146.1 + 45798 0.76 0.673027
Target:  5'- gGACgGCcGAGGAAGGCcgCCGCCACg -3'
miRNA:   3'- gUUGgCGcCUUUUUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 41031 0.69 0.956629
Target:  5'- gAGCCGUGGGAGGAGggccuaggacaGCUUCCGagggcUCGCu -3'
miRNA:   3'- gUUGGCGCCUUUUUC-----------UGAAGGC-----GGUG- -5'
28925 5' -51 NC_006146.1 + 49976 0.74 0.774413
Target:  5'- --cCCGCGGuuuuGGACcggCCGCCACa -3'
miRNA:   3'- guuGGCGCCuuuuUCUGaa-GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 68325 0.71 0.90518
Target:  5'- gGGCCGCGaGAGgauggcgucGAGGACggccUCCGCCGu -3'
miRNA:   3'- gUUGGCGC-CUU---------UUUCUGa---AGGCGGUg -5'
28925 5' -51 NC_006146.1 + 48245 0.69 0.956629
Target:  5'- -cGCCGCGcGGA--GGGCccCCGCCGCc -3'
miRNA:   3'- guUGGCGC-CUUuuUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 44324 0.69 0.963961
Target:  5'- gGGCCGUGGcAGccGGGGGCUUCUGCaCAg -3'
miRNA:   3'- gUUGGCGCC-UU--UUUCUGAAGGCG-GUg -5'
28925 5' -51 NC_006146.1 + 139060 0.74 0.793391
Target:  5'- gGACCcagaggGCGGAAGcuGGACUUUgGCCACg -3'
miRNA:   3'- gUUGG------CGCCUUUu-UCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 62020 0.73 0.854474
Target:  5'- uGGCCGCGGcgcucGGCcUCUGCCGCa -3'
miRNA:   3'- gUUGGCGCCuuuuuCUGaAGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.