miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28927 5' -52.8 NC_006146.1 + 116023 0.68 0.945189
Target:  5'- cCUCCggCCGGUUAAaggccuccacGGCCCGCugcuGGGg -3'
miRNA:   3'- -GAGGuaGGUUAGUU----------CCGGGUGu---UCCa -5'
28927 5' -52.8 NC_006146.1 + 99548 0.68 0.940529
Target:  5'- gUCCGagCCcccggggcagaGAUCGGGGUCCAgGAGGUa -3'
miRNA:   3'- gAGGUa-GG-----------UUAGUUCCGGGUgUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 131630 0.68 0.940529
Target:  5'- -gCCGUCuCGAgucCGGGGCCCACAcccguuccucAGGg -3'
miRNA:   3'- gaGGUAG-GUUa--GUUCCGGGUGU----------UCCa -5'
28927 5' -52.8 NC_006146.1 + 159056 0.68 0.93562
Target:  5'- -cCCAagcCCGAgaagCAGGGCCCggcGCAAGGg -3'
miRNA:   3'- gaGGUa--GGUUa---GUUCCGGG---UGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 62919 0.68 0.935116
Target:  5'- -aCCGUCUuugcccugucuguGGUCuccAGGGCCCugGAGGUc -3'
miRNA:   3'- gaGGUAGG-------------UUAG---UUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 61513 0.68 0.930462
Target:  5'- -gCCGUCCGAUCAgggAGGCCUccggugucCGGGGg -3'
miRNA:   3'- gaGGUAGGUUAGU---UCCGGGu-------GUUCCa -5'
28927 5' -52.8 NC_006146.1 + 100851 0.68 0.930462
Target:  5'- --gCA-CUGAUCAAGGCCCGCcggAAGGUc -3'
miRNA:   3'- gagGUaGGUUAGUUCCGGGUG---UUCCA- -5'
28927 5' -52.8 NC_006146.1 + 86295 0.68 0.929932
Target:  5'- cCUCUGUCCGG-CAuggcuggaguaggAGGCCCuggGCAGGGUc -3'
miRNA:   3'- -GAGGUAGGUUaGU-------------UCCGGG---UGUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 46619 0.68 0.925052
Target:  5'- -gCCAggucuUCC-AUCAGGGCCUugGGGGc -3'
miRNA:   3'- gaGGU-----AGGuUAGUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 85427 0.69 0.919392
Target:  5'- -aCCAgCCAggccGUgAAGGCCCugAGGGa -3'
miRNA:   3'- gaGGUaGGU----UAgUUCCGGGugUUCCa -5'
28927 5' -52.8 NC_006146.1 + 125681 0.69 0.907322
Target:  5'- cCUCCGUCCGGUUccAGaGUCCGgGAGGg -3'
miRNA:   3'- -GAGGUAGGUUAGu-UC-CGGGUgUUCCa -5'
28927 5' -52.8 NC_006146.1 + 143298 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 146376 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 152532 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 155610 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 149454 0.69 0.900916
Target:  5'- cCUCCca-UGAUguGGGCCCugGAGGUg -3'
miRNA:   3'- -GAGGuagGUUAguUCCGGGugUUCCA- -5'
28927 5' -52.8 NC_006146.1 + 168141 0.69 0.900916
Target:  5'- --aCAUCCGGgcuuGGGCCUGCGAGGg -3'
miRNA:   3'- gagGUAGGUUagu-UCCGGGUGUUCCa -5'
28927 5' -52.8 NC_006146.1 + 84452 0.69 0.894265
Target:  5'- cCUCCuaagcUCCAAguUCAAGGCCUuuuGCAaguGGGUg -3'
miRNA:   3'- -GAGGu----AGGUU--AGUUCCGGG---UGU---UCCA- -5'
28927 5' -52.8 NC_006146.1 + 103968 0.69 0.894265
Target:  5'- aCUCUcgCCGcaggaaGUC-AGGCCCACAuccAGGUu -3'
miRNA:   3'- -GAGGuaGGU------UAGuUCCGGGUGU---UCCA- -5'
28927 5' -52.8 NC_006146.1 + 502 0.7 0.887374
Target:  5'- cCUCCGcCCc--CGAGGCCCcCAGGGg -3'
miRNA:   3'- -GAGGUaGGuuaGUUCCGGGuGUUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.